PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_124887g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB | ||||||||
Protein Properties | Length: 209aa MW: 23609.7 Da PI: 8.1659 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.4 | 6.1e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv+ ++ +G g+W+t ++ g+ R++k+c++rw +yl MA_124887g0010 14 KGAWTKEEDARLVQHIQAHGEGCWRTLPKAAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 51.1 | 3.1e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg ++++Ed+l+++++++lG++ W++Ia +++ gRt+ ++k++w+++l MA_124887g0010 67 RGYFSEDEDDLILKLHALLGNK-WSLIAGRLP-GRTDDEIKNYWNSHL 112 799*******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.185 | 9 | 61 | IPR017930 | Myb domain |
SMART | SM00717 | 7.4E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.31E-28 | 13 | 108 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.4E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-21 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.13E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.635 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 7.8E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.1E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.8E-26 | 69 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.69E-11 | 70 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MGRAPCCPSG DGNKGAWTKE EDARLVQHIQ AHGEGCWRTL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGYF SEDEDDLILK LHALLGNKWS LIAGRLPGRT DDEIKNYWNS HLKRNMIMGL 120 DPLAHRPFQK NSRHHRSAPG NVKEPETVRS HEIVQDLFHC TSELSVKSEQ VSDAASELAR 180 DEHPHLNLNL ELSITRPSIQ AAGKEDVVN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 9e-29 | 13 | 116 | 26 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT113504 | 0.0 | BT113504.1 Picea glauca clone GQ03411_H16 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_195574.1 | 1e-79 | myb domain protein 4 | ||||
Swissprot | Q9SZP1 | 1e-80 | MYB4_ARATH; Transcription repressor MYB4 | ||||
TrEMBL | A9NTK0 | 1e-117 | A9NTK0_PICSI; Uncharacterized protein | ||||
STRING | AT4G38620.1 | 5e-79 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 4e-83 | myb domain protein 4 |