PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_124797g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family WRKY
Protein Properties Length: 374aa    MW: 40659.1 Da    PI: 4.4762
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_124797g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.34.2e-30159217259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers +dp++v++tY+++Hnh+
  MA_124797g0010 159 SDMWAWRKYGQKPIKGSPYPRGYYRCSSSkGCCARKQVERSCTDPSMVIVTYTSDHNHP 217
                     69*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-30153219IPR003657WRKY domain
SuperFamilySSF1182901.31E-25156219IPR003657WRKY domain
SMARTSM007741.1E-34158218IPR003657WRKY domain
PROSITE profilePS5081132.019159219IPR003657WRKY domain
PfamPF031066.7E-25160217IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MVLEDHCCNE IKGEEMGKGF QLPIRCAASC FGGVAALYPD KQENSCNQMN EGEFMFGTSI  60
VKQELEDKLD FVQPASFVYS GELVEALQAS SSLGEETNNK SCDLPGSPVK RDSPERSTGE  120
DCDVKAAPCS KRRKTVEKKV VCVPVGPADG RQKNDGPPSD MWAWRKYGQK PIKGSPYPRG  180
YYRCSSSKGC CARKQVERSC TDPSMVIVTY TSDHNHPWPA NRANSNSNSG LPAKQSQLEA  240
APILSEKSSN ISQEVASTPE EAAACINSSD NLFSLIINSP GRLEQRVISS LEIQADEPLA  300
FVQDVAELCI SGSNNLEDDD FYADLGELPD SSAIFSTRGS FFEDDESRNS GGIDRFNFFS  360
WSGSCGLLGN NAVI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-20138219679Disease resistance protein RRS1
5w3x_D1e-20138219679Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00167DAPTransfer from AT1G29280Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1017690.0BT101769.1 Picea glauca clone GQ01312_N15 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D6R4G31e-118A0A0D6R4G3_ARACU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.15e-49WRKY DNA-binding protein 65