PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_123846g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | NAC | ||||||||
Protein Properties | Length: 230aa MW: 26383.9 Da PI: 9.0599 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170.1 | 7.3e-53 | 14 | 144 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+ +yL++kv++++l++ ++i+e+d+yk++PwdLp+k+ +e+ewyfFs+r++ky++g r+nr++ sgyWkatg+dk++++k MA_123846g0010 14 LPPGFRFHPTDEELLIHYLERKVSSSPLPA-SIITEIDLYKHDPWDLPAKACYGEQEWYFFSPRNRKYPNGARPNRSAGSGYWKATGTDKPIVTK 107 79****************************.89***************7777789***************************************9 PP NAM 96 ....kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++vg+kk+Lvfykgr kg kt+W+mheyrl MA_123846g0010 108 sgntSSQKVGVKKSLVFYKGRPLKGLKTNWIMHEYRL 144 88777788***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.37E-64 | 7 | 169 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.755 | 14 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.8E-28 | 15 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MEEWASHQQV PPQLPPGFRF HPTDEELLIH YLERKVSSSP LPASIITEID LYKHDPWDLP 60 AKACYGEQEW YFFSPRNRKY PNGARPNRSA GSGYWKATGT DKPIVTKSGN TSSQKVGVKK 120 SLVFYKGRPL KGLKTNWIMH EYRLVETMPM KRKGSMRLDD WVLCRIYKKS EGPFMQNLLS 180 QHTSDANAAL SNVQEPHMCQ LPLTENWHWN SEPSACSLPT GNVWSSYDNG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-74 | 14 | 169 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-74 | 14 | 169 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-74 | 14 | 169 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-74 | 14 | 169 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 6e-74 | 14 | 169 | 17 | 165 | NAC domain-containing protein 19 |
4dul_B | 6e-74 | 14 | 169 | 17 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility. {ECO:0000269|PubMed:22278768}. | |||||
UniProt | Transcription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought, salt and cold treatments. {ECO:0000269|PubMed:18813954}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT115957 | 1e-160 | BT115957.1 Picea glauca clone GQ03709_H02 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007025712.1 | 1e-87 | PREDICTED: NAC transcription factor 25 | ||||
Swissprot | Q8GY42 | 8e-81 | NAC25_ARATH; NAC transcription factor 25 | ||||
Swissprot | Q8H4S4 | 9e-81 | NAC10_ORYSJ; NAC domain-containing protein 10 | ||||
TrEMBL | A0A482ER90 | 1e-121 | A0A482ER90_9SPER; NAC5 domain protein | ||||
STRING | EOY28334 | 4e-87 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.2 | 3e-84 | NAC domain containing protein 47 |
Publications ? help Back to Top | |||
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