PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_12356g0020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | ZF-HD | ||||||||
Protein Properties | Length: 94aa MW: 10148.4 Da PI: 8.2942 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 102.2 | 3.4e-32 | 27 | 84 | 2 | 60 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 ++vrY eC+kNhAas+Gg+avDGCgEfm+s g+egtaaa++CaAC+CHR+FHR++ve+e MA_12356g0020 27 KSVRYGECRKNHAASIGGYAVDGCGEFMAS-GDEGTAAAMRCAACNCHRSFHRKKVEKE 84 579**************************9.999*********************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 7.0E-22 | 27 | 90 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 6.6E-30 | 29 | 81 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.2E-27 | 30 | 80 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.083 | 31 | 80 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 94 aa Download sequence Send to blast |
MGPSEIVQQI EAGSAATARE GDIASRKSVR YGECRKNHAA SIGGYAVDGC GEFMASGDEG 60 TAAAMRCAAC NCHRSFHRKK VEKETLCECH RIRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Inhibits zinc finger homeodomain (ZHD) transcription factors by interacting with them to prevent both their nuclear localization and their DNA-binding properties. Involved in integrating signals from multiple hormones by regulating the expression of specific genes. {ECO:0000269|PubMed:21455630}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT108234 | 1e-137 | BT108234.1 Picea glauca clone GQ03118_L05 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010931461.2 | 4e-34 | mini zinc finger protein 2 | ||||
Swissprot | Q9LJW5 | 3e-28 | MIF2_ARATH; Mini zinc finger protein 2 | ||||
TrEMBL | A9NK89 | 8e-45 | A9NK89_PICSI; Uncharacterized protein | ||||
STRING | XP_008792497.1 | 5e-32 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP91 | 16 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28917.1 | 1e-30 | mini zinc finger 2 |
Publications ? help Back to Top | |||
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