PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_122595g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

LBD

Protein Properties

Length: 362aa MW: 39663.8 Da PI: 8.2215

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_122595g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	104.3	1.1e-32	31	132	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C++ C+l+p++ p++q +++ +v+k+FG++ ++ +++a+p+++r+++++sl+yeA+ r+ +Pv+Gavg+++++++ql+q+ MA_122595g0010 31 SCNGCRVLRKGCSDTCILRPCLqwiesPEAQGHATVFVAKFFGRAGLMAFISAVPDHQRPALFQSLLYEACGRTVNPVNGAVGLLWSGNWQLCQA 125 6********************************************************************************************** PP DUF260 91 kaelall 97 ++e++l MA_122595g0010 126 AVETVLK 132 *998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.684	30	136	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.4E-27	31	130	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006807	Biological Process	nitrogen compound metabolic process
GO:0060776	Biological Process	simple leaf morphogenesis

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MTATTGTGSS GRDLSVFIQR KQEADGRKRM SCNGCRVLRK GCSDTCILRP CLQWIESPEA 60 QGHATVFVAK FFGRAGLMAF ISAVPDHQRP ALFQSLLYEA CGRTVNPVNG AVGLLWSGNW 120 QLCQAAVETV LKGGTLRPPQ SSSVIPTCST RPSLMNSLSA NFRVNSNVNN INSGSRPSLE 180 VGKARPVNEM REMYTVKPEV DFPLNRLQES CNPHQPWAAK VKSEPHDLSL CEAFEAVRHN 240 QTIIHLPPSE IAAPPRRVRQ RIEGINEVNY QDLSNSNSDD VKCLGDFDFH PSTGMELKAN 300 LDLTLNFEAS SSSHFKRRVS SPSIVSVNSE GSVTSLESGS LRVPNEKDSS AAKEHKVLDL 360 FP

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MTATTGTGSS GRDLSVFIQR KQEADGRKRM SCNGCRVLRK GCSDTCILRP CLQWIESPEA  60
QGHATVFVAK FFGRAGLMAF ISAVPDHQRP ALFQSLLYEA CGRTVNPVNG AVGLLWSGNW  120
QLCQAAVETV LKGGTLRPPQ SSSVIPTCST RPSLMNSLSA NFRVNSNVNN INSGSRPSLE  180
VGKARPVNEM REMYTVKPEV DFPLNRLQES CNPHQPWAAK VKSEPHDLSL CEAFEAVRHN  240
QTIIHLPPSE IAAPPRRVRQ RIEGINEVNY QDLSNSNSDD VKCLGDFDFH PSTGMELKAN  300
LDLTLNFEAS SSSHFKRRVS SPSIVSVNSE GSVTSLESGS LRVPNEKDSS AAKEHKVLDL  360
FP

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT119465	0.0	BT119465.1 Picea glauca clone GQ04106_A22 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A3G6JFC7	0.0	A0A3G6JFC7_PINTA; ASYMMETRIC LEAVES 2-like protein 39

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP403	16	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	2e-69	LOB domain-containing protein 37