PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MA_12171g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 210aa MW: 24082.9 Da PI: 7.2899 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.1 | 3.8e-17 | 24 | 73 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++kG+r +k +g+Wv+eIr p++ r +++lg++ tae+Aa+a++aa +l+g MA_12171g0010 24 QFKGIRMRK-WGSWVSEIRMPKT---REKIWLGSYKTAEQAARAYDAAVYCLRG 73 69*****99.**********965...4*************************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 4.1E-29 | 23 | 83 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.837 | 24 | 81 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.45E-26 | 24 | 83 | No hit | No description |
SMART | SM00380 | 4.7E-31 | 24 | 87 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.82E-19 | 24 | 83 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 7.7E-8 | 25 | 36 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.6E-9 | 25 | 73 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.7E-8 | 47 | 63 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 210 aa Download sequence Send to blast |
MEKPSREHYS RSSPDEDRGQ SCRQFKGIRM RKWGSWVSEI RMPKTREKIW LGSYKTAEQA 60 ARAYDAAVYC LRGPNAKFNF PDSVYSIPSV SSLTRQQIQV AAAKYALGEI SSTSPSVQNI 120 KNNNHKAREK PASQSQPSLV SETVWPCDSQ QISKAQDLGF WETLFDGNCV LNLEKIPSIE 180 EASVWEFIPT WQEEQQEGYI FSDRTDLWNF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 9e-14 | 19 | 81 | 9 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT124364 | 0.0 | BT124364.1 Picea sitchensis clone WS0473_F21 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | D5ADJ9 | 1e-120 | D5ADJ9_PICSI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G21960.1 | 7e-36 | ERF family protein |