PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_121581g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family AP2
Protein Properties Length: 493aa    MW: 54545.2 Da    PI: 4.8547
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_121581g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2483.1e-15284321243
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAa 43 
                      y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa
  MA_121581g0010 284 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAA 321
                     59******9.**********955...5**************8 PP
2AP227.58e-093453732856
             AP2  28 rkrfslgkfgtaeeAakaaiaarkklege 56 
                     r+r +lg+f+taeeAa a++ a+ +l+ge
  MA_121581g0010 345 RTRLWLGTFDTAEEAAFAYDTAAYQLRGE 373
                     59*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.13E-25283382No hitNo description
SMARTSM003801.3E-31284386IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-14284322IPR016177DNA-binding domain
PROSITE profilePS5103222.142284380IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-20284321IPR001471AP2/ERF domain
PRINTSPR003671.1E-10285296IPR001471AP2/ERF domain
PfamPF008473.0E-9285321IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-17342381IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-12343381IPR016177DNA-binding domain
PfamPF008471.7E-4344373IPR001471AP2/ERF domain
PRINTSPR003671.1E-10346362IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MPCSLSPASY NPILLQAAGE FGFGCLENFR RMAGAIESEF PSHVPSINCG AFMADPVIYE  60
ELMKAVEPYG VRNSKTELSD CENLVGVSGS SSCFLWPDQQ QMQMRVLGSN SVRNVTEMSA  120
CAPTISDSWS ELLMNGCSNS GDLTWYPSFH GSEVNSHQQY AFVPDRPMDM GLQSMPSSQM  180
GSSQEGMDSS QALSLSEIYE QIQANLQMQK KQQMDELQLQ HLLAKNQLPQ QVLGSSAYHY  240
QQQQQLKQLR DLSLSRNLLG ARAQPMKLSA RNDSKLGIAR AAKLYRGVRQ RHWGKWVAEI  300
RLPRNRTRLW LGTFDTAEEA AFEEMIQNWV LQGLPSSTEE LPRNRTRLWL GTFDTAEEAA  360
FAYDTAAYQL RGEYARLNFP DLRYLLLSNP DNGSPNVLSS PGNALSVLKS SVDAKLQAIC  420
QRLSQENSSE NRLMAQTANN EALENVKCEV SGSSNSSTIC GAESASTSPS KCEVDSSALQ  480
KAPSFSIFAE LDD
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1102870.0BT110287.1 Picea glauca clone GQ03219_D17 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0C9QV801e-106A0A0C9QV80_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_7287_2371 transcribed RNA sequence
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22190.15e-27ERF family protein