PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_121533g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB | ||||||||
Protein Properties | Length: 415aa MW: 45311.2 Da PI: 5.1482 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54 | 3.9e-17 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +l++ v+++G+g +W + +r+ g++R++k+c++rw++yl MA_121533g0010 14 RGPWSPEEDTILKNFVEKHGTGgNWIALPRKAGLKRCGKSCRLRWLNYL 62 89*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 39.7 | 1.1e-12 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ + + G++ W+ Ia+ ++ gRt++++k++w++ MA_121533g0010 69 GDFSEEEDSIICSLYTSIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 689******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.678 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.41E-27 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.7E-13 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-15 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-23 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.59E-10 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 22.345 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 4.8E-11 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-10 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-23 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.10E-7 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 415 aa Download sequence Send to blast |
MGRAPCCDKA NVKRGPWSPE EDTILKNFVE KHGTGGNWIA LPRKAGLKRC GKSCRLRWLN 60 YLRPDIKHGD FSEEEDSIIC SLYTSIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK 120 CTKDNDNQQI RRLLAKEAAK GAGIRRPYNG DHISSETAAM SASNTQSSSE SLTEPATGAN 180 AMNSPYDALE TGNVPGSTSS ESQTVGFNAT HGTNTHYYEQ GFKQIMSQTD QYSTLTSMLM 240 RLESNESDCS TDNIPSLGID TIPNEVPFYA PTAMNVKAEA MERPSSDPQL NQACNSMPAL 300 WESCTSNSTS GGNNYQFSTL MNEDTGNFSY GLSAEMDELI LYRNHASNGS ILQVKEEPDY 360 STAAAYWASQ LAEPAKASGF TATICPNYSY ILPSSEGGIG TGTTAQGLFQ EGIIY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-25 | 14 | 117 | 7 | 108 | B-MYB |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT115486 | 0.0 | BT115486.1 Picea glauca clone GQ03617_M11 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q9FKL2 | 2e-74 | MYB36_ARATH; Transcription factor MYB36 | ||||
TrEMBL | B8LKH9 | 0.0 | B8LKH9_PICSI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 1e-76 | myb domain protein 36 |
Publications ? help Back to Top | |||
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