PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_120821g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family GATA
Protein Properties Length: 420aa    MW: 46334 Da    PI: 8.5442
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_120821g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.15.1e-18318352135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C +Cg+ kTp+WR gp g+ktLCnaCG++y++ +l
  MA_120821g0010 318 CLHCGVQKTPQWRAGPMGPKTLCNACGVRYKSGRL 352
                     99*****************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.6E-16312362IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.253316348IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.0E-14316350IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.66E-14316375No hitNo description
CDDcd002023.42E-15317368No hitNo description
PROSITE patternPS003440318343IPR000679Zinc finger, GATA-type
PfamPF003208.2E-16318352IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MNCLHTVSFA FQKKQLRHAY VMNIQFIGTX KTRGRILFHS KKQHLGMDAG TGNGTSSFAT  60
DKMKVEAVTK LETGIPGDFF DHIEDLLDFS NEEIGAPIGE SSINCPKDDI LGGSSMTETV  120
SSNFRADEND SGNLCIPCDD LAELEWLSNF AEDSFLETGP KSFYTPDFEV GLKDKYEEGK  180
NSDKFRSPSP ISVLGQNSDK LRSPSPTSVL GQNSDKFRSP SPTSVLESSS RKISLIPEIS  240
VPGKARSKRP RVPVCNWASR ILSPASSDGL LENGPNSFSS DSGHFVTQQA ESEPLKKSIK  300
TNQGRKKNGQ EPIQVRKCLH CGVQKTPQWR AGPMGPKTLC NACGVRYKSG RLLPEYRPAA  360
SPTFSVVKHS NSHKKVLEMR RQRELTMQQQ ASQAKQAYLG FGDDCLVNTG EHYRLSDMLP
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.12e-57GATA transcription factor 9