PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_120697g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

WRKY

Protein Properties

Length: 454aa MW: 49922.5 Da PI: 7.0078

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_120697g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	103.7	1e-32	285	342	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCt +C+vkk+vers+edp +v++tYeg+H h+ MA_120697g0010 285 EDGYRWRKYGQKAVKNSPYPRSYYRCTNGKCSVKKRVERSSEDPGIVITTYEGQHSHP 342 8********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.2E-34	269	344	IPR003657	WRKY domain
SuperFamily	SSF118290	8.5E-29	276	344	IPR003657	WRKY domain
PROSITE profile	PS50811	31.766	279	344	IPR003657	WRKY domain
SMART	SM00774	2.7E-38	284	343	IPR003657	WRKY domain
Pfam	PF03106	6.0E-26	285	342	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence Send to blast
MAGKQKKSES IGQECNMDVM WKLSTGETSP TDTRSKVRNP KEEDDHNRAS TTSNPIMNTP 60 SHGVFGELCW NMDTDFLDRH VPPTSEGGMA SRISSGLMTD VDDFSGFESP YMSFTQCLQA 120 GLKMGEADYS ALSKSLACGE LGDQQQQQQP EFLEYDQEVK VQPSHSNCNS QNPSAIQLRP 180 FIAEAQVGGR SGDTSTVPGT PNSSMSSSSS EGHELEQSSL VAPSVTTSST AAKGQGPADP 240 ESQTDLIAAE KPSMESKKPP RKKGQKRNRE PRFAFMTKSD VDHLEDGYRW RKYGQKAVKN 300 SPYPRSYYRC TNGKCSVKKR VERSSEDPGI VITTYEGQHS HPSPAILRGS AESQSHFSDQ 360 RLNSPFTQTP LIRFPPHPMI MNSTNQVPAA SPSCTNNLHH LGTIKSCMNP HLLPQSHHGP 420 QPHQAHLMPT NLSQQPLIDH GLLEDIVPPG MRKF

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence Send to blast

MAGKQKKSES IGQECNMDVM WKLSTGETSP TDTRSKVRNP KEEDDHNRAS TTSNPIMNTP  60
SHGVFGELCW NMDTDFLDRH VPPTSEGGMA SRISSGLMTD VDDFSGFESP YMSFTQCLQA  120
GLKMGEADYS ALSKSLACGE LGDQQQQQQP EFLEYDQEVK VQPSHSNCNS QNPSAIQLRP  180
FIAEAQVGGR SGDTSTVPGT PNSSMSSSSS EGHELEQSSL VAPSVTTSST AAKGQGPADP  240
ESQTDLIAAE KPSMESKKPP RKKGQKRNRE PRFAFMTKSD VDHLEDGYRW RKYGQKAVKN  300
SPYPRSYYRC TNGKCSVKKR VERSSEDPGI VITTYEGQHS HPSPAILRGS AESQSHFSDQ  360
RLNSPFTQTP LIRFPPHPMI MNSTNQVPAA SPSCTNNLHH LGTIKSCMNP HLLPQSHHGP  420
QPHQAHLMPT NLSQQPLIDH GLLEDIVPPG MRKF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	4e-26	274	345	7	78	Probable WRKY transcription factor 4
2lex_A	4e-26	274	345	7	78	Probable WRKY transcription factor 4
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT102554	0.0	BT102554.1 Picea glauca clone GQ0196_H01 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0D6QVU5	1e-113	A0A0D6QVU5_ARACU; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP14	17	875

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69310.2	4e-48	WRKY DNA-binding protein 57