PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_120531g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | ERF | ||||||||
Protein Properties | Length: 301aa MW: 33134.3 Da PI: 11.4344 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.9 | 8e-21 | 23 | 73 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 +++GVr+++ +gr++AeIrd ++ ++r++lg+f+taeeAa+a+++a+++l+g+ MA_120531g0010 23 HFRGVRRRP-WGRFAAEIRDpWK----KTRVWLGTFDTAEEAARAYDNAARALRGA 73 69*******.**********883....5*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 3.7E-31 | 23 | 80 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.0E-35 | 23 | 86 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.82E-27 | 23 | 80 | No hit | No description |
SuperFamily | SSF54171 | 9.81E-22 | 23 | 80 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.853 | 23 | 80 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.4E-14 | 23 | 72 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.0E-11 | 24 | 35 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.0E-11 | 46 | 62 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MAPRDELQNC GRGGGQTTAK EVHFRGVRRR PWGRFAAEIR DPWKKTRVWL GTFDTAEEAA 60 RAYDNAARAL RGAKAKTNFA TPRDNQSSSQ TSTVESWSSP KNVVVARSAP PSDASWRNFY 120 SAKYLDARVN GNANGNPGFK EAASAAAWKT IYVNRPVESR AIDLNISALD FGRVDDAATI 180 NARAHETMNG AVALRCPAVN PFDCASQVAL PGKLLLFEGI ASRPEKRQKT CVRSADEKLS 240 LGQQWSALNK GAGSGEEVET RNVQIRAPAV VRRSRRETSR ATAIRRRLLS LTTRLRRKPR 300 G |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 6e-20 | 7 | 79 | 1 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 293 | 299 | RLRRKPR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00542 | DAP | Transfer from AT5G44210 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT115764 | 0.0 | BT115764.1 Picea glauca clone GQ03705_M13 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K0M6X5 | 1e-175 | A0A0K0M6X5_PINTB; ERF1 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28360.1 | 2e-25 | ERF domain protein 12 |