PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_12028g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C2H2
Protein Properties Length: 811aa    MW: 90063.7 Da    PI: 8.4821
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_12028g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.61.1e-05217239123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C++C++ F r  nL+ H r+H
  MA_12028g0010 217 YVCEICNQGFQRDQNLQMHRRRH 239
                    9*********************9 PP
2zf-C2H2157.1e-05294316123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    +kC++C+k +  +s++k H++t+
  MA_12028g0010 294 WKCEKCSKGYAVQSDYKAHLKTC 316
                    58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.6E-5216239IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.3E-5216239No hitNo description
SMARTSM003550.0052217239IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.97217239IPR007087Zinc finger, C2H2
PROSITE patternPS000280219239IPR007087Zinc finger, C2H2
SMARTSM00355130258288IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-4285315IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.3E-5289314No hitNo description
SMARTSM0035548294321IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 811 aa     Download sequence    Send to blast
MYARNGSREG DHPRILFVLG GSETGRTVEG RMDLTVLMWM LAMADQIPSI DIHTDKVMRA  60
ALYDGLKINL SDHTHVENTA EDATPNYDNS HKACRLSLGP LLVTSAYTVG RSGAVSGWTC  120
SSSPRPLFNQ SRSGEAASSS SSSLSNMTSA SGTSGSLHGT SLHIQAVPGF HSSSLQTSSP  180
FPVSSNNKRK RRPAGTPDPD AEVVALSPKT LMESDRYVCE ICNQGFQRDQ NLQMHRRRHK  240
VPWKLLKRPT PEVRKRVYVC PDPTCLHNDP CHALGDLVGI KKHFRRKHSI EKQWKCEKCS  300
KGYAVQSDYK AHLKTCGTRG HSCDCGRVFS RVESFIEHQD NCIKAKERAA FGYSDQPSLP  360
SLTARTSSSN DTLSATRSEL SSAGKQFDSA KFHDQAAWPN MEQRELQFLP ANHQYNTSET  420
AITSTNNAAD VTRDHFISSA TDQRSNPATS HAKEHRFLDD SALRLQLSLG FCTDPPENHE  480
KKPHVKSDHF AAANQRQPSN RAGSQRALGL ALNSNDSMPG TKNVEAEAAM TDVFSTSSRP  540
VDHYEASLIN DTGSSGAVVE NGFRDSPYKR RKELSLFEAL WPGHMVRRDS EEVQAPVNLT  600
WKSSTAQIPA PPLPETRQGE KQSRYLGRMA EAIVNVESIN SQSEAVERTQ LVNPWSDIAA  660
AARLAKEQAQ QERDEPKSHM AGVELLKHQA REQLRQATAE KAYAEHARDL AKKQIELAEA  720
EFAAARRIQE QAQAQLAKAQ LLKEQATRRI DETRLEITCQ ACRQQFLCHI PPSWQPDQNS  780
NKIPMMLPVE YPSASNFSRP VLFQNGLKKE P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-19291350463Zinc finger protein JACKDAW
5b3h_F3e-19291350463Zinc finger protein JACKDAW
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1172280.0BT117228.1 Picea glauca clone GQ03815_F06 mRNA sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.11e-102C2H2-like zinc finger protein