PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_119483g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C2H2
Protein Properties Length: 554aa    MW: 62554.6 Da    PI: 6.6246
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_119483g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.00112951123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y C++C+k F +   L  H+r+H
  MA_119483g0010 29 YLCKICSKKFVSGRALGGHMRVH 51
                    56*******************99 PP
2zf-C2H213.90.00016305327123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC+ C+k+Fs+++ L  H  +H
  MA_119483g0010 305 FKCTTCNKVFSSHEALGGHRASH 327
                     89**************9999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.9E-52753No hitNo description
SMARTSM003550.0262951IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.4922956IPR007087Zinc finger, C2H2
PfamPF139128.6E-72951IPR007087Zinc finger, C2H2
PROSITE patternPS0002803151IPR007087Zinc finger, C2H2
SMARTSM00355200132154IPR015880Zinc finger, C2H2-like
PfamPF139122.2E-8304329IPR007087Zinc finger, C2H2
SMARTSM003550.017305327IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.783305332IPR007087Zinc finger, C2H2
PROSITE patternPS000280307327IPR007087Zinc finger, C2H2
SuperFamilySSF576675.22E-5398426No hitNo description
PfamPF139126.5E-12400425IPR007087Zinc finger, C2H2
SMARTSM003552401423IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.723401428IPR007087Zinc finger, C2H2
PROSITE patternPS000280403423IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MATVDILYPR SQAMEVFNKQ EEREHQLSYL CKICSKKFVS GRALGGHMRV HAPASMAADK  60
LTETEFKKSK KPRDSDDKSM EDKDDKEGMD GNGRNLMYAL RRNPKRSWRF ADRDYSFLLE  120
YEFDSKSIDS SINCDPREKE FSSRKGLFGH MKFHSETHQD SGDADLEESQ KHETQDKEND  180
RSESYAEIEL DHPSGNSSRF DKWMQGKIFK RPRYAPQLNP LEQFGLATND EEKDVAMCLV  240
MLASGVNTAQ IPQFQMGTEE LGSGDLKLPN TGSHLPKCIR KKPKYKKIDG DAGLYNDDEV  300
KKARFKCTTC NKVFSSHEAL GGHRASHNKV KGCFWQIEEE KESQEEDISD EELHTGSDSQ  360
LPGNFHKPSP KERTKDSCVK ARDETRTMKA TAFSVKKSRV HECSICHRDF ASGQALGGHK  420
RCHWGSARAS DTTTSTICSN KETPMQQQMP ARVEVLDLNL PATVDDDCDA GNHNTLSGNP  480
VDSHGASYAQ VYSPPYSQSW LMSLNCPKQG LLLYSNNTHL DQDEEVDSKL VKGIGFGRGY  540
DSDFPARAQP WLQL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0C9RQJ11e-162A0A0C9RQJ1_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_25048_2114 transcribed RNA sequence
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP2521820
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.19e-21C2H2 family protein