PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_11879g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | NAC | ||||||||
Protein Properties | Length: 221aa MW: 25994.5 Da PI: 10.4985 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 142.3 | 2.7e-44 | 3 | 119 | 1 | 117 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeelv +yLk kv+g k+el e+i+e+diyk+ePwdLp k + +++ ewyfF++rd+ky++g r+nrat++gyWkatgkd++v s MA_11879g0010 3 LPPGFRFHPTDEELVAYYLKGKVHGWKIEL-EIIPELDIYKCEPWDLPeKsLLPGRDLEWYFFCSRDRKYPNGLRTNRATEAGYWKATGKDRKVSS 97 79****************************.99***************4334445677*************************************9 PP NAM 95 kkgelvglkktLvfykgrapkge 117 + +l+g++ktLvfy+g +++ MA_11879g0010 98 -HMRLIGMQKTLVFYRGLCMNTV 119 .999***********98666555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.85E-47 | 2 | 114 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 41.994 | 3 | 165 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-22 | 4 | 118 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MSLPPGFRFH PTDEELVAYY LKGKVHGWKI ELEIIPELDI YKCEPWDLPE KSLLPGRDLE 60 WYFFCSRDRK YPNGLRTNRA TEAGYWKATG KDRKVSSHMR LIGMQKTLVF YRGLCMNTVS 120 TRMNVKTQLR SRYLEISLIG NVFFYLVVKL SGLRSMYVLC LCSQILQITD LLHIARKEPC 180 HYARRVTNQK QKKVPPFTEI RKSLSTNKTR GGRNLRRRSQ I |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-42 | 1 | 121 | 13 | 131 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015165583.1 | 5e-63 | PREDICTED: NAC domain-containing protein 86-like | ||||
Refseq | XP_022868651.1 | 3e-63 | NAC domain-containing protein 86-like | ||||
Swissprot | Q9FFI5 | 1e-57 | NAC86_ARATH; NAC domain-containing protein 86 | ||||
TrEMBL | A0A287PYG1 | 1e-62 | A0A287PYG1_HORVV; Uncharacterized protein | ||||
STRING | Lus10007377 | 2e-63 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65910.1 | 1e-62 | NAC domain containing protein 28 |
Publications ? help Back to Top | |||
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