PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_11879g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family NAC
Protein Properties Length: 221aa    MW: 25994.5 Da    PI: 10.4985
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_11879g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM142.32.7e-4431191117
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                    lppGfrFhPtdeelv +yLk kv+g k+el e+i+e+diyk+ePwdLp k  + +++ ewyfF++rd+ky++g r+nrat++gyWkatgkd++v s
  MA_11879g0010   3 LPPGFRFHPTDEELVAYYLKGKVHGWKIEL-EIIPELDIYKCEPWDLPeKsLLPGRDLEWYFFCSRDRKYPNGLRTNRATEAGYWKATGKDRKVSS 97 
                    79****************************.99***************4334445677*************************************9 PP

            NAM  95 kkgelvglkktLvfykgrapkge 117
                     + +l+g++ktLvfy+g   +++
  MA_11879g0010  98 -HMRLIGMQKTLVFYRGLCMNTV 119
                    .999***********98666555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.85E-472114IPR003441NAC domain
PROSITE profilePS5100541.9943165IPR003441NAC domain
PfamPF023651.1E-224118IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MSLPPGFRFH PTDEELVAYY LKGKVHGWKI ELEIIPELDI YKCEPWDLPE KSLLPGRDLE  60
WYFFCSRDRK YPNGLRTNRA TEAGYWKATG KDRKVSSHMR LIGMQKTLVF YRGLCMNTVS  120
TRMNVKTQLR SRYLEISLIG NVFFYLVVKL SGLRSMYVLC LCSQILQITD LLHIARKEPC  180
HYARRVTNQK QKKVPPFTEI RKSLSTNKTR GGRNLRRRSQ I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-42112113131Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015165583.15e-63PREDICTED: NAC domain-containing protein 86-like
RefseqXP_022868651.13e-63NAC domain-containing protein 86-like
SwissprotQ9FFI51e-57NAC86_ARATH; NAC domain-containing protein 86
TrEMBLA0A287PYG11e-62A0A287PYG1_HORVV; Uncharacterized protein
STRINGLus100073772e-63(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-62NAC domain containing protein 28
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]