PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_118448g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB | ||||||||
Protein Properties | Length: 315aa MW: 35434.8 Da PI: 6.3497 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.7 | 7.5e-15 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+ eEd++l++++++ G +W++ ++ g+ R++k+c++rw +yl MA_118448g0010 15 KGPWSHEEDQILLNYIQRNGHASWRALPELAGLLRCGKSCRLRWTNYL 62 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 50.1 | 6.4e-16 | 68 | 111 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T++E+ ++++++ lG++ W++Ia+ ++ gRt++++k++w + MA_118448g0010 68 RGSFTEQEERTIIQLHAILGNR-WSSIASQLP-GRTDNEIKNFWKT 111 89********************.*********.***********86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.8E-23 | 6 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.489 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.51E-28 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.5E-11 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.2E-14 | 15 | 62 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.34E-8 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 25.309 | 63 | 117 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-25 | 66 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-15 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.0E-15 | 68 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.81E-11 | 70 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MDRAAPCCAK KGLKKGPWSH EEDQILLNYI QRNGHASWRA LPELAGLLRC GKSCRLRWTN 60 YLRPDIKRGS FTEQEERTII QLHAILGNRW SSIASQLPGR TDNEIKNFWK TRLQKRLLKM 120 GLDPSTHVPI AEAKPSAPEG YKALAVTRHK AQWESARLEA EARHSSESLI MSSTSTAGYH 180 TVPSDNPPAD YFLKIWNSEA GKAFRKENHH PNGGGDDPFL SSEIPLSSVS SLCCVKTPEV 240 ISCQPDITMG QTEDKATEEL GFPEPLLDFL DTDDNNNNTN GIQSELRTDF LHQPASPWPE 300 LLDEDYWINI AFSQN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-28 | 13 | 117 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017980167.1 | 1e-91 | PREDICTED: transcription repressor MYB6 isoform X1 | ||||
Refseq | XP_021280626.1 | 9e-92 | transcription factor MYB41 | ||||
Swissprot | Q9M2D9 | 9e-88 | MYB17_ARATH; Transcription factor MYB17 | ||||
TrEMBL | A0A222UAM7 | 3e-95 | A0A222UAM7_GINBI; R2R3MYB15 | ||||
STRING | EOX96013 | 4e-91 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61250.1 | 5e-85 | myb domain protein 17 |