PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_116862g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB | ||||||||
Protein Properties | Length: 312aa MW: 35633.6 Da PI: 5.9679 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.7 | 3.1e-14 | 19 | 66 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT Ed +l +++k +G g Wk +++ g++R++k+c++rw++yl MA_116862g0010 19 RGAWTGSEDRILSEYIKTHGVGGWKDLPKKAGLKRCGKSCRLRWLNYL 66 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 55 | 1.9e-17 | 72 | 117 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ ++eE+ellv+++++lG++ W++Ia +++ Rt++++k++w+++l MA_116862g0010 72 RGNISPEEEELLVRLHRLLGNR-WSLIAGRLP-SRTDNEIKNYWNTHL 117 7899******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.786 | 14 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.58E-27 | 17 | 113 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-11 | 18 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-12 | 19 | 66 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.6E-22 | 20 | 73 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.77E-9 | 21 | 66 | No hit | No description |
PROSITE profile | PS51294 | 26.339 | 67 | 121 | IPR017930 | Myb domain |
SMART | SM00717 | 3.6E-17 | 71 | 119 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-15 | 72 | 117 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-25 | 74 | 121 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.20E-13 | 76 | 117 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MGRSPSCSSC CKHEESLNRG AWTGSEDRIL SEYIKTHGVG GWKDLPKKAG LKRCGKSCRL 60 RWLNYLRPDI KRGNISPEEE ELLVRLHRLL GNRWSLIAGR LPSRTDNEIK NYWNTHLSKR 120 VQMGEFEPRF QRPVKRRGIP SPSDCDEEGV VDKDKYISRT LPLKTRALRY CGTAVGDGGS 180 YDYDHVPDTH DGIDEEEDLK AEDDHVVEID TSKSWSQLLL EDCMADYQYD QVQANNGLQP 240 NSMLSTSNGT DDHHQSPSLS QSIILKENHS SSYCNLMDQE FPSSKDFNSS YFDSFLDLGE 300 LSISLSFFHR LY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 6e-24 | 17 | 121 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 131 | 136 | RPVKRR |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KU131218 | 0.0 | KU131218.1 Picea abies transcription factor MYB29 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A167V8X0 | 1e-172 | A0A167V8X0_PICAB; Transcription factor MYB29 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 9e-48 | myb domain protein 3 |