PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_116185g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | ERF | ||||||||
Protein Properties | Length: 218aa MW: 24240.8 Da PI: 6.3131 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.4 | 5.7e-16 | 115 | 165 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +g+++AeI dp + k +r++l +f taeeAa a+++a+ +++g MA_116185g0010 115 HYRGVRKRP-WGKFAAEISDPAK--KGARVWLDTFVTAEEAALAYDRAAFQIRG 165 7********.**********844..34************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 5.2E-29 | 114 | 173 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.49E-27 | 115 | 173 | No hit | No description |
SuperFamily | SSF54171 | 1.11E-20 | 115 | 174 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.6E-12 | 115 | 165 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.7E-32 | 115 | 179 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.471 | 115 | 173 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.9E-13 | 116 | 127 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.9E-13 | 155 | 175 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MLEMIRHHLL EVEDEMDIID LHHAGGNEPS FSSSSLSFSP TVTWDYIHAT ATASSSCQNS 60 GSRSTSEDSE NEFTEQQSSA SSSVSTIIRS ADVVNVKVKP QPREEEKGEM RQGRHYRGVR 120 KRPWGKFAAE ISDPAKKGAR VWLDTFVTAE EAALAYDRAA FQIRGARALL NFPLAFSSNS 180 ENESAVGHMG HKMKRGREEK DEEWAACDRK SCVNRSSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 7e-33 | 112 | 179 | 2 | 69 | ATERF1 |
3gcc_A | 7e-33 | 112 | 179 | 2 | 69 | ATERF1 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A9NMA3 | 2e-61 | A9NMA3_PICSI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17500.1 | 5e-24 | ethylene responsive element binding factor 1 |