PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_115348g0020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | ERF | ||||||||
Protein Properties | Length: 189aa MW: 20257.6 Da PI: 5.3818 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.8 | 2.3e-17 | 96 | 147 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.kr.krfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIrd k+ +r++lg+f ta+eAa a++ a+ +++g+ MA_115348g0020 96 HYRGVRQRP-WGKFAAEIRD----SaKKgARVWLGTFNTAQEAAVAYDSAAYRIRGA 147 8********.**********....33334*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 5.0E-31 | 95 | 154 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.50E-29 | 95 | 154 | No hit | No description |
SMART | SM00380 | 5.4E-35 | 96 | 160 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.4E-12 | 96 | 146 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.13 | 96 | 154 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.27E-22 | 96 | 155 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 9.3E-11 | 97 | 108 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.3E-11 | 120 | 136 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MDVAGSVNVD KNMLELIRHH LLEEEDEVGM IDIGGNLSPT AMGSCQNNSR GLTSEDNENG 60 CSSSACPVTG GAEAVNLQPL EPPPLEVKNK ESGGKHYRGV RQRPWGKFAA EIRDSAKKGA 120 RVWLGTFNTA QEAAVAYDSA AYRIRGAKAM LNFPLALSSS SENVPARGQM ERDKKRGREE 180 AVAVGESEG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 9e-33 | 94 | 159 | 3 | 68 | ATERF1 |
3gcc_A | 9e-33 | 94 | 159 | 3 | 68 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00549 | DAP | Transfer from AT5G47230 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by ethephon (ethylene-releasing compound) in buds and to a lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by both protein kinases and protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q40479 | 2e-32 | ERF2_TOBAC; Ethylene-responsive transcription factor 2 | ||||
TrEMBL | A9NMA3 | 1e-53 | A9NMA3_PICSI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47230.1 | 4e-34 | ethylene responsive element binding factor 5 |
Publications ? help Back to Top | |||
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