PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_11527g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family HSF
Protein Properties Length: 287aa    MW: 32267.8 Da    PI: 9.1364
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_11527g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind105.93.3e-33791702102
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    Fl k+y++++d+++++++sw +++n+fvv++++ef+ ++Lp+yF h+nf+SFvRQLn YgF+k+ + +          eF++k F kg+++ll++i
  MA_11527g0010  79 FLVKTYRLVDDPSTDHIVSWGDQNNTFVVWQPKEFSASLLPSYFNHTNFSSFVRQLNNYGFRKTVRGR---------CEFSNKLFWKGQQHLLSHI 165
                    9**************************************************************99988.........68***************** PP

                    XXXXX CS
   HSF_DNA-bind  98 krkks 102
                    +rkk 
  MA_11527g0010 166 QRKKV 170
                    ***86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.0E-4875168IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.105.4E-3576168IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.29E-3176168IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.9E-1779102IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.0E-2879168IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-17117129IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-17130142IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MVKKMEAQLT PTPLTATESD NERGYLRTMS NLSAVITCVT VYILLSWAAA EQEAANTGRV  60
LMVGCGDVKD AGRLVPAPFL VKTYRLVDDP STDHIVSWGD QNNTFVVWQP KEFSASLLPS  120
YFNHTNFSSF VRQLNNYGFR KTVRGRCEFS NKLFWKGQQH LLSHIQRKKV SGPSRMQMEY  180
GKSSSVFQPI SSTQHSDVPT AAPPSLSDLE KETLRRNNSL LLSEIARLQN ICSRDIRLLV  240
RHNTGNPPLI DIMDRTKIDD ASPSSSMTDV TEEVAMRPHK LFGVLLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B9e-227516826129Heat shock factor protein 1
5d5v_B9e-227516826129Heat shock factor protein 1
5d5v_D9e-227516826129Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLH9WUJ62e-75H9WUJ6_PINTA; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.12e-49heat shock transcription factor B4