PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_1151g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C3H
Protein Properties Length: 274aa    MW: 29045.9 Da    PI: 8.8612
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_1151g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.51.7e-061134225
                  -S---SGGGGTS--TTTTT-SS-S CS
       zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                  k + C  f+ t  C++G++C+F+H
  MA_1151g0010 11 KSKACTKFFSTSGCPFGENCHFMH 34
                  6678******************** PP
2zf-CCCH26.21.3e-0879105127
                   --S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                   ykt++C+++     C++Gd+C+FaH++
  MA_1151g0010  79 YKTRICNRYGTAEGCRFGDKCHFAHSE 105
                   9************************95 PP
3zf-CCCH37.83.1e-12245269126
                   --S---SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                   ykt+ C +f++ GtC +GdrC+FaHg
  MA_1151g0010 245 YKTKVCENFSQ-GTCTFGDRCHFAHG 269
                   9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.0E-8534IPR000571Zinc finger, CCCH-type
SMARTSM003560.21936IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-6936IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.465937IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-51134IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-976109IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.2E-1478109IPR000571Zinc finger, CCCH-type
SMARTSM003566.9E-478105IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.28678106IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-579105IPR000571Zinc finger, CCCH-type
SuperFamilySSF547915.84E-15149229IPR004088K Homology domain, type 1
SMARTSM003225.1E-10158228IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.107.1E-15159228IPR004088K Homology domain, type 1
PROSITE profilePS5008413.984159223IPR004088K Homology domain, type 1
PfamPF000134.2E-11161224IPR004088K Homology domain, type 1
CDDcd001057.83E-13163224No hitNo description
SuperFamilySSF902295.76E-9242274IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-16243274IPR000571Zinc finger, CCCH-type
SMARTSM003566.4E-8244270IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.859244271IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9245269IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MESLPTGLRS KSKACTKFFS TSGCPFGENC HFMHYIPGGM NLISQVSNLG SGLGTASRKS  60
TGPPTSILPS DQAAPVQPYK TRICNRYGTA EGCRFGDKCH FAHSENELKK GNTLAPVERE  120
RTLSKDAVPG VMDGRPGGRL VQREPTPPGM AAAASFGASA TAKISVDASL AGAIIGKGGV  180
NSKQICHTTG AKLAIRDHES DSNLKNIELE GSFDQIKLAS TMVHELIMQT SAVAAKPSGF  240
VFNNYKTKVC ENFSQGTCTF GDRCHFAHGA SELR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1006970.0BT100697.1 Picea glauca clone GQ00411_H03 mRNA sequence.
GenBankEF0877580.0EF087758.1 Picea sitchensis clone WS02745_G03 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010265899.11e-112PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R08e-98C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA9P2810.0A9P281_PICSI; Uncharacterized protein
STRINGXP_010265899.11e-111(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP10261756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.11e-52C3H family protein