PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_114951g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ARR-B
Protein Properties Length: 547aa    MW: 60734.7 Da    PI: 6.2582
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_114951g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like79.25.1e-25230282255
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     +r++Wt eLH++F++av++  G++k +Pk+ile+m+v+gLt+++v+SHLQkYRl
  MA_114951g0010 230 ARVNWTLELHQQFLNAVNES-GPNKVVPKRILEIMNVPGLTRDNVASHLQKYRL 282
                     79*****************9.********************************8 PP
2Response_reg58.92.8e-20621701109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHH.HHHTTTSEEEEEESTTTHHHHHHHHHT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkei.reeepklpiivvtahgeeedalealka 92 
                     vlivdD+ l++ +l+++l++ +y +v++ ++ ++a+ l+ e++  +Dl++  +  pg dG+++l+         lp+i+++++ge + + + + +
  MA_114951g0010  62 VLIVDDDTLLLAGLEKMLRQCDY-NVTTSTSVSQAISLVMENKssFDLVMSEVYFPGEDGFKILEVVgVG--LGLPVIMMSMNGETDVVMRGITR 153
                     8**********************.***************777778*******************998444..56********************* PP

                     TESEEEESS--HHHHHH CS
    Response_reg  93 GakdflsKpfdpeelvk 109
                     Ga  +l Kp+ +ee+++
  MA_114951g0010 154 GACNYLIKPIRMEEVRN 170
                     ************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.57E-2758184IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23008.1E-3059184No hitNo description
SMARTSM004482.5E-2160172IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011035.1461176IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.3E-1762170IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.34E-2063176No hitNo description
PROSITE profilePS512949.453226285IPR017930Myb domain
SuperFamilySSF466895.2E-17227286IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.9E-25228286IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-22230282IPR006447Myb domain, plants
PfamPF002491.5E-7231281IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MTNVICLFSE IKVILLKRRH SAGGLVLFAA AMADDHHHQN KRSRNAFSAI HEEIFSPSGL  60
HVLIVDDDTL LLAGLEKMLR QCDYNVTTST SVSQAISLVM ENKSSFDLVM SEVYFPGEDG  120
FKILEVVGVG LGLPVIMMSM NGETDVVMRG ITRGACNYLI KPIRMEEVRN LWQHVIRRHG  180
RQYDHLVKLK DGHGDSSSNG RVADSSESTA FKDVKQGGEV IKDISGLKEA RVNWTLELHQ  240
QFLNAVNESG PNKVVPKRIL EIMNVPGLTR DNVASHLQKY RLYLKRLCGI IPEPCPAASF  300
RATRDEKSGG TMQIRPGGKT SAVSPLSSSG SSSGLKELPL RLELDGRNLD QATLESLEQF  360
RSHEHEQKLA AANTGQVLPE LVVAAAPAPI HVDEGSEGSP EVHGMRPSFH VRWLRRNLQG  420
GGGHKASQVD DLAARSFKLN FVEDLHNTKT PPKTVDLPTH QPQLQNPSPT TEILEKDDAY  480
HHEEAWPMAE YDKIYEDLLF NIFLEEDIGF PNHQINFRSF PFVASDVSEE YGATVNADNF  540
NCQPSPE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A7e-16225287163ARR10-B
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1036641e-107BT103664.1 Picea glauca clone GQ0271_G08 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024380962.12e-93two-component response regulator ORR22-like
TrEMBLA0A0D6R6V81e-117A0A0D6R6V8_ARACU; Two-component response regulator
STRINGPP1S42_161V6.18e-93(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP29217120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01760.17e-65response regulator 14