PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_11492g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family WRKY
Protein Properties Length: 448aa    MW: 49893.6 Da    PI: 10.0943
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_11492g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.12.7e-31378435359
                    -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ edp+++++tYeg+Hnh+
  MA_11492g0010 378 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCLEDPSMLIVTYEGDHNHS 435
                    99************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105336.6E-19329374IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.7E-33364435IPR003657WRKY domain
PROSITE profilePS5081130.228371437IPR003657WRKY domain
SuperFamilySSF1182906.93E-27374435IPR003657WRKY domain
SMARTSM007741.7E-37376436IPR003657WRKY domain
PfamPF031061.1E-26378434IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MWAPGVSRPL GDLTGGRAPA GLRTERWPAT RQGNEAMNED GVIGNGAAGV SAGRCNCTRR  60
WVCEWGIGFL FYRAVSICFR LSGKIEAEAA AAAAMREVNN VEEANRAGLE SSYRVLAILS  120
QQQQQHQDQR HEINTLSDLD MTTKEAISKF QKVVSLLGAR TGHARFRRGL RQSPAYTKAC  180
METPSYCFSQ HVSPGLVYPP ELSQSPAPIR QFMPSQNSTP AVFGMSAHHH RQQQLYQQQQ  240
QQQQQKLHYS QLQHQQQQQL SLQAELMLRN NSFMKFENSI SCTPTLSSTK SFMSSLSIDG  300
SVANDKPPLL TYHQLMNPIQ EGATVSSSKR KCSGKGDEAG GKCRSTGRCH CSKRRKLRVK  360
RSIRVPAISS KLADIPPDDY SWRKYGQKPI KGSPHPRGYY KCSSVRGCPA RKHVERCLED  420
PSMLIVTYEG DHNHSRKLSG SPNLVVHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-20364435272WRKY transcription factor 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1165900.0BT116590.1 Picea glauca clone GQ03802_L02 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008805954.11e-100protein WRKY1-like isoform X1
TrEMBLA0A0D6QUH91e-116A0A0D6QUH9_ARACU; Uncharacterized protein
STRINGXP_008805954.11e-99(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP18171541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.15e-64WRKY DNA-binding protein 21