PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_114573g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

bHLH

Protein Properties

Length: 552aa MW: 60148.5 Da PI: 6.1964

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_114573g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.2	0.00017	438	476	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L++l+ + +K + a++L +A+ YIk Lq MA_114573g0010 438 RKEKLGDRITALQQLVSPF-----GKTDTASVLLEAIGYIKFLQ 476 677888999*****998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.484	426	475	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.30E-6	436	480	No hit	No description
SuperFamily	SSF47459	6.02E-11	436	487	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0053	437	481	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.8E-8	440	483	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 552 aa Download sequence Send to blast
MAEETETSAT VSSGGNWWNA VSTGSSSSLV SEWSNINILQ PSPCASAALT DIQTLNWSSS 60 SNHHIRNSGN GEDVDNLSSS ITNNTSSSLT SMDSGHQELV DSGSLLGQFA HAVPDNNTLW 120 NQMLLGSSEG MQSSSVANLN EVLYSRALRQ ELVEPSDQLK KIQQEVPLQG WEFRNMASFQ 180 AEDIHLNPQQ QAPLLYNLDD RLQSSNAHAL PDLGRWSVAP PKQPGHSLPR NISLNAAYSN 240 TPQFDLSRIK QEYPGPYTSP DLGVSLSSNT QLLQGFGIHA EPNFKNEGFC HILESATTKA 300 FLKPTMAARG CHITGDDYPG RWLPNSSLSQ MLPSSPSKQS VLNFGSMSKQ VLDFSAGKPD 360 HLKAQQVSKT DCNLQYFPEG KQIHGPAQHR TMPHGEEARD SSSDTKRNNS CTDQSTAEAI 420 FKRPRLDTGS TLPTFKVRKE KLGDRITALQ QLVSPFGKTD TASVLLEAIG YIKFLQDQVQ 480 VLSTPYLKSG GTSNPGSQDH KGWGSSDKKD SDEPKQDLRS RGLCLVPVSC TLHVANDNGA 540 DYWTPSLGGT YR

Sequence ? help Back to Top

Protein Sequence Length: 552 aa Download sequence Send to blast

MAEETETSAT VSSGGNWWNA VSTGSSSSLV SEWSNINILQ PSPCASAALT DIQTLNWSSS  60
SNHHIRNSGN GEDVDNLSSS ITNNTSSSLT SMDSGHQELV DSGSLLGQFA HAVPDNNTLW  120
NQMLLGSSEG MQSSSVANLN EVLYSRALRQ ELVEPSDQLK KIQQEVPLQG WEFRNMASFQ  180
AEDIHLNPQQ QAPLLYNLDD RLQSSNAHAL PDLGRWSVAP PKQPGHSLPR NISLNAAYSN  240
TPQFDLSRIK QEYPGPYTSP DLGVSLSSNT QLLQGFGIHA EPNFKNEGFC HILESATTKA  300
FLKPTMAARG CHITGDDYPG RWLPNSSLSQ MLPSSPSKQS VLNFGSMSKQ VLDFSAGKPD  360
HLKAQQVSKT DCNLQYFPEG KQIHGPAQHR TMPHGEEARD SSSDTKRNNS CTDQSTAEAI  420
FKRPRLDTGS TLPTFKVRKE KLGDRITALQ QLVSPFGKTD TASVLLEAIG YIKFLQDQVQ  480
VLSTPYLKSG GTSNPGSQDH KGWGSSDKKD SDEPKQDLRS RGLCLVPVSC TLHVANDNGA  540
DYWTPSLGGT YR

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT107531	0.0	BT107531.1 Picea glauca clone GQ03108_M09 mRNA sequence.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP1342	13	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	9e-44	bHLH family protein