PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_113509g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family M-type_MADS
Protein Properties Length: 386aa    MW: 43599.8 Da    PI: 6.5823
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_113509g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.38.4e-28958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    k+ien++nrqvtfskRrng++KKA+ELS+LCd+++a+i+fs++g+l  +s
  MA_113509g0010  9 KKIENSTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSQFS 58
                    68********************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.1E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.758161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.12E-28280IPR002100Transcription factor, MADS-box
CDDcd002653.59E-37276No hitNo description
PRINTSPR004045.3E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003197.5E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-263859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MGRVKLQIKK IENSTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SGRLSQFSGK  60
KSRIEDVIAR FVNLPEHERG RLQNQEFLTR ALKKLKCESE LANHLASPGN LSSVEELQME  120
ITRWQLQLQD AERKLRCLEA DPRTITTLQD AEYYERMLED SLQRVRLRKQ LLEESQMASY  180
NQANLQLYMQ QNANPNGAST SDNQLAHWMS QRDPQTSVHN YLDHSHPNGI LAIRDCVEEC  240
MPSGVVFPGH PQEGHGSYQL GSHASDHSSP APMRFDYTTL EADAGDHNHH QQQHHPHHMG  300
EYASPVGLPP AQWQPSYAAT ASLMSSMVHN PYSMVQGMME NVPGIMSQHQ AESSSHGALS  360
NHQDDVGIDV SFQSNMGDHV TRPDCQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-17181179Myocyte-specific enhancer factor 2B
1tqe_Q3e-17181179Myocyte-specific enhancer factor 2B
1tqe_R3e-17181179Myocyte-specific enhancer factor 2B
1tqe_S3e-17181179Myocyte-specific enhancer factor 2B
6c9l_A3e-17181179Myocyte-specific enhancer factor 2B
6c9l_B3e-17181179Myocyte-specific enhancer factor 2B
6c9l_C3e-17181179Myocyte-specific enhancer factor 2B
6c9l_D3e-17181179Myocyte-specific enhancer factor 2B
6c9l_E3e-17181179Myocyte-specific enhancer factor 2B
6c9l_F3e-17181179Myocyte-specific enhancer factor 2B
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002285097.14e-84PREDICTED: agamous-like MADS-box protein AGL104
TrEMBLA0A223HCC11e-125A0A223HCC1_GINBI; AGL66 protein
STRINGVIT_18s0001g09540.t011e-83(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.17e-62AGAMOUS-like 104