PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_113508g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family HSF
Protein Properties Length: 236aa    MW: 26171.6 Da    PI: 9.7836
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_113508g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind105.25.2e-33271192103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl k+y++++d+++++++sw +++n++vv+ ++ef+ ++Lp+yF h+nf+SFvRQLn+YgF+k+ + +          eF+++ F+kg+++ll++
  MA_113508g0010  27 FLVKTYRLVDDPSTDHIVSWGDHNNTIVVWRPKEFSASLLPTYFNHTNFSSFVRQLNTYGFRKIVRGR---------CEFANELFRKGQQHLLSH 112
                     9***************************************************************9988.........67**************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i+r+k +
  MA_113508g0010 113 IQRRKPS 119
                     ****975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.8E-5223116IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.9E-3625116IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.31E-3225116IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.4E-2927116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-182750IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-186577IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-187890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MKKLPTPLGR MGGNGARDAG RLVAAPFLVK TYRLVDDPST DHIVSWGDHN NTIVVWRPKE  60
FSASLLPTYF NHTNFSSFVR QLNTYGFRKI VRGRCEFANE LFRKGQQHLL SHIQRRKPSS  120
TSTTQASQME YDKSSSSSIP DTSSTAQVSE VPAAGPSLSE LNEILRNSSV LLSEIARLQN  180
ICGRNITLFI PHNTRNPPSI DMDRSKIDNP TPSSSVTDVA EEISMNPPKL FGVPLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-212711629129Heat shock factor protein 1
5d5v_B8e-212711629129Heat shock factor protein 1
5d5v_D8e-212711629129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020583395.15e-51heat stress transcription factor B-4b-like
SwissprotQ9C6355e-48HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLH9WUJ33e-72H9WUJ3_PINTA; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.14e-48heat shock transcription factor B4