PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MA_113501g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 191aa MW: 21242.9 Da PI: 6.8381 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 143.2 | 8.2e-45 | 11 | 110 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +Ca+Ck+lrr+CakdCv+apyfpa+qp+kfa vhk+FGasnv+k+l++lp ++r da+ss+vyeA+ar+rdPvyG+vg i+ lqqq+++l+ +la MA_113501g0010 11 PCASCKLLRRRCAKDCVFAPYFPADQPQKFASVHKVFGASNVSKMLQELPVHQRADAVSSMVYEANARVRDPVYGCVGAISYLQQQVANLQMQLA 105 7********************************************************************************************** PP DUF260 96 llkee 100 + ++e MA_113501g0010 106 RSQAE 110 99887 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.417 | 10 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.7E-44 | 11 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 191 aa Download sequence Send to blast |
MGTSKASGSS PCASCKLLRR RCAKDCVFAP YFPADQPQKF ASVHKVFGAS NVSKMLQELP 60 VHQRADAVSS MVYEANARVR DPVYGCVGAI SYLQQQVANL QMQLARSQAE IMCMHIQQQE 120 ALLSDSTDNI DSKQAIMGTM NDHQLHYDQI HANNYHHPSD CSTSSHDSPQ QLLTHAQTVY 180 DSLDIREALW T |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-49 | 3 | 112 | 4 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-49 | 3 | 112 | 4 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT102703 | 0.0 | BT102703.1 Picea glauca clone GQ02011_K24 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010685903.2 | 3e-70 | PREDICTED: LOB domain-containing protein 12 | ||||
Refseq | XP_011624484.1 | 2e-70 | LOB domain-containing protein 12-like | ||||
Swissprot | Q8LBW3 | 3e-66 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | A0A2R6QJD9 | 4e-68 | A0A2R6QJD9_ACTCH; LOB domain-containing protein | ||||
STRING | GLYMA11G29450.1 | 9e-69 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G30130.1 | 1e-68 | LBD family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|