PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_113446g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | ERF | ||||||||
Protein Properties | Length: 210aa MW: 23558.5 Da PI: 5.1473 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.8 | 2.1e-16 | 23 | 72 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++kG+r +k +g+Wv+eIr p++ r r++lg++ t+e Aa+a++ a +l+g MA_113446g0010 23 QFKGIRMRK-WGKWVSEIRMPKS---RSRIWLGSYNTPETAARAYDFALYCLRG 72 79*****99.**********954...4***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.17E-28 | 22 | 82 | No hit | No description |
PROSITE profile | PS51032 | 21.232 | 23 | 80 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-28 | 23 | 82 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-19 | 23 | 82 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.1E-31 | 23 | 86 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.8E-9 | 24 | 72 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-8 | 24 | 35 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-8 | 46 | 62 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MAKPSPNQNS HSKLESRSLE SKQFKGIRMR KWGKWVSEIR MPKSRSRIWL GSYNTPETAA 60 RAYDFALYCL RGSEAKFNFP DSPPEIPCAS SLSPPQIQTA AAKFATEEFQ LPSEEDAAFS 120 RSVSKAERSN DGQEILAVTG RTFWDSVLLE CLESGKSLNL NDFPPLDLSM DYFGVLFQPR 180 EDWSQEGVSK SVFPVVEDSA MKVELSSTLN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-14 | 20 | 80 | 2 | 63 | ATERF1 |
3gcc_A | 3e-14 | 20 | 80 | 2 | 63 | ATERF1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_026430012.1 | 2e-40 | ethylene-responsive transcription factor ERF017-like | ||||
TrEMBL | A9NQM1 | 5e-81 | A9NQM1_PICSI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G21960.1 | 2e-40 | ERF family protein |