PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_11285g0020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | LBD | ||||||||
Protein Properties | Length: 193aa MW: 21795.8 Da PI: 6.8618 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 130 | 1e-40 | 35 | 134 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +Ca+Ck++r+kC+++Cvlapyfp+++p+kf vh++FG+ +v+kll++lp e+r da+s++vyeA r+rdPv+G+vg+i++lq+++++l+++la+ MA_11285g0020 35 PCAGCKIQRKKCSEKCVLAPYFPQNNPEKFLLVHRIFGNGHVIKLLQDLPAEQRGDAVSTMVYEASERIRDPVHGCVGIINELQNKVAELQSQLAS 130 7**********************************************************************************************9 PP DUF260 97 lkee 100 +++e MA_11285g0020 131 AQAE 134 9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.369 | 34 | 135 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.8E-40 | 35 | 132 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MVKRFRISKK TVTKHSNGKM SEATAFKSQT WSTSPCAGCK IQRKKCSEKC VLAPYFPQNN 60 PEKFLLVHRI FGNGHVIKLL QDLPAEQRGD AVSTMVYEAS ERIRDPVHGC VGIINELQNK 120 VAELQSQLAS AQAEITNITR QHVNLLPLVT EYHEVSDPNF FCLSPQESED MTHTSSSVLD 180 DLDPLELWEP LWT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-35 | 25 | 147 | 1 | 123 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-35 | 25 | 147 | 1 | 123 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT109375 | 0.0 | BT109375.1 Picea glauca clone GQ03207_L09 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007205910.2 | 2e-54 | LOB domain-containing protein 1 | ||||
Swissprot | Q9LQR0 | 2e-51 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | B8LQI9 | 6e-83 | B8LQI9_PICSI; Uncharacterized protein | ||||
STRING | XP_008224697.1 | 1e-53 | (Prunus mume) | ||||
STRING | EMJ07109 | 8e-54 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 1e-42 | LOB domain-containing protein 1 |