PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_112632g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

NF-YA

Protein Properties

Length: 194aa MW: 21265 Da PI: 7.8201

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_112632g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	103.9	1.4e-32	96	152	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy +Il+RRq+Rak+e+e+kl +k+rkpylheSRh hAl+R+Rg+gGrF MA_112632g0010 96 EEPVYVNAKQYYGILRRRQSRAKAESENKL-IKNRKPYLHESRHLHALKRARGCGGRF 152 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.5E-37	94	155	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	37.292	95	155	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	2.0E-27	97	152	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	4.3E-23	98	120	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	100	120	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	4.3E-23	129	152	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
IDGSAPDEQQ PQADPVQQEA PPPGMIPPPA MTLLPPEFVM PHTQLELGQA MVRAAYPYPD 60 PYFGGIVAAY GPQAVIHPHM LGVPHAGLPL PSDAVEEPVY VNAKQYYGIL RRRQSRAKAE 120 SENKLIKNRK PYLHESRHLH ALKRARGCGG RFLNAKKQDE VSQENNSNGN IVHVPSVDKP 180 DAEKKSSSAQ NTDS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	7e-22	95	159	1	65	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT104418	0.0	BT104418.1 Picea glauca clone GQ02810_C14 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020268973.1	5e-71	nuclear transcription factor Y subunit A-7 isoform X1
Refseq	XP_020268974.1	5e-71	nuclear transcription factor Y subunit A-7 isoform X1
Refseq	XP_020268975.1	5e-71	nuclear transcription factor Y subunit A-7 isoform X1
Refseq	XP_020268976.1	5e-71	nuclear transcription factor Y subunit A-7 isoform X1
Swissprot	Q84JP1	5e-49	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A2K1KAU8	3e-66	A0A2K1KAU8_PHYPA; Uncharacterized protein
STRING	PP1S42_174V6.1	5e-67	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP680	16	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	1e-51	nuclear factor Y, subunit A7

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]