PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_112054g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family NAC
Protein Properties Length: 365aa    MW: 42684.4 Da    PI: 6.5166
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_112054g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.51.9e-51301552128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                     +pGfrFhPt+eelv +yL++kvegk++++ e i++vd+y+++Pw+Lp+ +  +ekew+f++krd+ky++g+r+nr+t+sgyWkatg d+ + ++ 
  MA_112054g0010  30 MPGFRFHPTEEELVEFYLRRKVEGKHFNI-ELITSVDLYRYDPWELPALACIGEKEWFFYVKRDRKYRNGDRPNRVTTSGYWKATGADRMIRKEV 123
                     69***************************.89***************7666799***************************************99 PP

             NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                     +  +glkktLvfykg+apkg++t+W+mheyrl
  MA_112054g0010 124 SGCIGLKKTLVFYKGKAPKGKRTSWIMHEYRL 155
                     999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-5526176IPR003441NAC domain
PROSITE profilePS5100554.88529176IPR003441NAC domain
PfamPF023653.5E-2631155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MNFPMSSCNI EDKMWKAGES SSKHDQDVIM PGFRFHPTEE ELVEFYLRRK VEGKHFNIEL  60
ITSVDLYRYD PWELPALACI GEKEWFFYVK RDRKYRNGDR PNRVTTSGYW KATGADRMIR  120
KEVSGCIGLK KTLVFYKGKA PKGKRTSWIM HEYRLPQPKS LRIQKSELCI CRVHEKSGGS  180
EEGRQRAKDH RTENHENLEM HQPYMICTNP KTAGESCNFE IKERGKDEIV KLEEMLTDIK  240
TMPGSEIEEE RFRSQMEYRV PYPMEYRVPD QSENIQERIY SEDGNVWRTV TWPVALNEDL  300
ELSLTPSFMC PRAPDQPAVA EDLYNNSPSN LVLTNALTYG ACLPTCSDKL WEWNPVRNNG  360
NDAFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-532618217174NAC domain-containing protein 19
3swm_B4e-532618217174NAC domain-containing protein 19
3swm_C4e-532618217174NAC domain-containing protein 19
3swm_D4e-532618217174NAC domain-containing protein 19
3swp_A4e-532618217174NAC domain-containing protein 19
3swp_B4e-532618217174NAC domain-containing protein 19
3swp_C4e-532618217174NAC domain-containing protein 19
3swp_D4e-532618217174NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLR4N5L61e-87R4N5L6_JATCU; NAC transcription factor 036
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.13e-87NAC domain containing protein 35