PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_111475g0020

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

C3H

Protein Properties

Length: 1015aa MW: 113518 Da PI: 4.4704

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_111475g0020	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.6	6.7e-06	776	797	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 ++C ff r G C +G++C+F H MA_111475g0020 776 PECYFFKRDGRCFRGASCRFVH 797 68******************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF109905	9.03E-15	14	88	IPR000061	SWAP/Surp
SMART	SM00648	1.4E-6	36	96	IPR000061	SWAP/Surp
PROSITE profile	PS50128	12.426	38	80	IPR000061	SWAP/Surp
Pfam	PF01805	2.2E-10	39	73	IPR000061	SWAP/Surp
SMART	SM00356	0.0077	772	799	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.723	772	800	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006396	Biological Process	RNA processing
GO:0003723	Molecular Function	RNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1015 aa Download sequence Send to blast
MQTSPVRDAP GLPQPLPPIS SSLLAPPSKP SDEELVRNIE LLSQFVVKNG PEFENMARAK 60 EAGNPKFSFL FGGEPGSDAW IGFEYFKWTK MKCELELRIQ QKPEVKQLAE TSVPPEPTQQ 120 LAETCFPPEP TQKLANTLLP SQPTHQRAQL AIALEGVAKS PAGSDTDMED DFISLAPSNK 180 DHKDAHTNQA RETKIELKGD KISEQQSFAC LSSSLIPTNT SSKELMPVIG NQLGELKLEN 240 QKSKGVCNVS EFKGPSVEDR SPIQSRPKEL QNIQEGAFVE HSTPPDKRLY QMSEGPCIQD 300 LSPVRYFPDE FQQASEVPSI KDMNPVQSLP NEFQQRSEGL CVEDVSPVRS SPGELEHTPR 360 GLLVEDLSPV HSSLQRLQQM YDGPSIEDLS PVQSSPKELH DISEGPCVED LSPVQSSQKD 420 LPQMYEGLSV EDASPVQSFA EELQQTSHTN IDEEGHTSSA SREEPSGELN AVQEMDYSME 480 EPFEVITGKE GDSSMKESFD AIAEQERDFS MKEPFDAIVE QEMDFSMKEP NAVLSEQERD 540 SLMKEPFEGI AEQESHSSMK EAFEVIAEKE RVSSMKELCE VTAEQERDSS MKEPLEVRSM 600 GPICEITGPA SEHNEQIENI DVADKIRSNS TAVSDIEGKE IEAVKFEVSE SFKGLYECVP 660 QENSNIKEVD NANLDTEMPM EHEQKPLNVD EFGRLIREGA SDSESDGVLY TGRAGTRSPS 720 RGDRRKRNPS PRRRRGRRSR SRSWSPRRQR SRSRTPPADF RRGGEAEGRK RRGSAPECYF 780 FKRDGRCFRG ASCRFVHQEV PVDNISKWSG GGRSREQKEL IRDTQISHTA KEVSAKMEED 840 KPESMSPDRL CNGQDSLILK EKISEQGKQL DEVSVSEKGM LTREANHGSC MPELDANLDS 900 QPPQNANLDS ELHLTPPGKE DIQSSPQNRD FQSESLPVED SQSQALKMEE ISPHLMPTGD 960 FHSLPPPTED SRSQSLPVED FRSQPLHMED FRSQPLQPPE MEEIPPHPLP TEDXX

Sequence ? help Back to Top

Protein Sequence Length: 1015 aa Download sequence Send to blast

MQTSPVRDAP GLPQPLPPIS SSLLAPPSKP SDEELVRNIE LLSQFVVKNG PEFENMARAK  60
EAGNPKFSFL FGGEPGSDAW IGFEYFKWTK MKCELELRIQ QKPEVKQLAE TSVPPEPTQQ  120
LAETCFPPEP TQKLANTLLP SQPTHQRAQL AIALEGVAKS PAGSDTDMED DFISLAPSNK  180
DHKDAHTNQA RETKIELKGD KISEQQSFAC LSSSLIPTNT SSKELMPVIG NQLGELKLEN  240
QKSKGVCNVS EFKGPSVEDR SPIQSRPKEL QNIQEGAFVE HSTPPDKRLY QMSEGPCIQD  300
LSPVRYFPDE FQQASEVPSI KDMNPVQSLP NEFQQRSEGL CVEDVSPVRS SPGELEHTPR  360
GLLVEDLSPV HSSLQRLQQM YDGPSIEDLS PVQSSPKELH DISEGPCVED LSPVQSSQKD  420
LPQMYEGLSV EDASPVQSFA EELQQTSHTN IDEEGHTSSA SREEPSGELN AVQEMDYSME  480
EPFEVITGKE GDSSMKESFD AIAEQERDFS MKEPFDAIVE QEMDFSMKEP NAVLSEQERD  540
SLMKEPFEGI AEQESHSSMK EAFEVIAEKE RVSSMKELCE VTAEQERDSS MKEPLEVRSM  600
GPICEITGPA SEHNEQIENI DVADKIRSNS TAVSDIEGKE IEAVKFEVSE SFKGLYECVP  660
QENSNIKEVD NANLDTEMPM EHEQKPLNVD EFGRLIREGA SDSESDGVLY TGRAGTRSPS  720
RGDRRKRNPS PRRRRGRRSR SRSWSPRRQR SRSRTPPADF RRGGEAEGRK RRGSAPECYF  780
FKRDGRCFRG ASCRFVHQEV PVDNISKWSG GGRSREQKEL IRDTQISHTA KEVSAKMEED  840
KPESMSPDRL CNGQDSLILK EKISEQGKQL DEVSVSEKGM LTREANHGSC MPELDANLDS  900
QPPQNANLDS ELHLTPPGKE DIQSSPQNRD FQSESLPVED SQSQALKMEE ISPHLMPTGD  960
FHSLPPPTED SRSQSLPVED FRSQPLHMED FRSQPLQPPE MEEIPPHPLP TEDXX

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	723	734	RRKRNPSPRRRR