PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_111188g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | TALE | ||||||||
Protein Properties | Length: 879aa MW: 95225.1 Da PI: 7.3747 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28 | 3.7e-09 | 559 | 596 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LA+++gLt +qV++WF N R + MA_111188g0010 559 FEHflHPYPKDADKHMLARQTGLTRNQVSNWFINARVR 596 554459******************************88 PP | |||||||
2 | BELL | 124.5 | 4e-40 | 422 | 493 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqelq+kkakL+ +l+eVd+rY+qy++q+q+v+ssFea ag g+ak YtslAl++iSrhFrcL+dai++qi MA_111188g0010 422 ERQELQMKKAKLVAMLDEVDQRYRQYYHQMQIVVSSFEATAGFGAAKTYTSLALQTISRHFRCLRDAISGQI 493 79*********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.6E-64 | 335 | 491 | IPR006563 | POX domain |
Pfam | PF07526 | 2.7E-52 | 340 | 490 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.179 | 537 | 600 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.1E-9 | 540 | 604 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.07E-12 | 540 | 601 | No hit | No description |
SuperFamily | SSF46689 | 1.07E-16 | 542 | 607 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.0E-28 | 543 | 606 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 5.1E-18 | 557 | 596 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 879 aa Download sequence Send to blast |
MSARGGGHTS TRIANIKSWA HINFSSVQIS IAIVIPAKEA QRTPQKKFDN PGQHSSNIQA 60 DNMQTLYLMN PGYAGYTDAT TSGNMVLLNH SVGNTLPANN LAGGQPSQHF IGIPLPTAPL 120 SQRSSLGVMG NSPTSQQDIN SNLLASRMGG HPYNVWRNGG NELTFMQTTD AAGSSQSLSG 180 HLNNSGSMGH QPVAEISQMG LRRAPMSSIQ EQQSGMLPSG LSLQLEHSHG STGHGQGLSL 240 SLSPQQPSTV QLPSFQNQPT DSDINCPGIS TTSEENMSRT DRGTSKWAGS LSAFRASSRD 300 GMLGSGFSNT GFSGNLLAPG ANKQMHLDSS STGAAGLSNV LTGSKYLKAA QQLLDEVVNV 360 GKGIKPDSAK HQKSQSWIGT TANKENSAAE GGGKDGAAAA PTWRSTSAQE TNDRPSELSP 420 AERQELQMKK AKLVAMLDEV DQRYRQYYHQ MQIVVSSFEA TAGFGAAKTY TSLALQTISR 480 HFRCLRDAIS GQIRMTSKSL GEEDSTVSGK GETSRLRFVD QQLRQQRALQ QLGMIQQHAW 540 RPQRGLPERS VSVLRAWLFE HFLHPYPKDA DKHMLARQTG LTRNQVSNWF INARVRLWKP 600 MVEEMYNEET KETEVEHGSN EKTGKESGEK KEDALSKEGA AGNNGNIHDH QSGKTTKLDN 660 IAQDGGADEK PTGAPKSENA SNLINARNQS FGMGGTSDSQ IFNETENEGI RQGQLKKARN 720 GTQECTSLLS PNMSIEVDLK SDETNSGEFG DHKFSDERQN TEDYSFVHNA MVHPDNSGSF 780 GSYQIGDLSR YGHESFTPRF SGSGGVSLTL GLQRTDGLSL QGTQQNYMST QSLALGRRHD 840 LGGNSSDYCN IETSAAHPAN IYENINIQPR KCFATQLMH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 5e-16 | 546 | 603 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 5e-16 | 546 | 603 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT104277 | 0.0 | BT104277.1 Picea glauca clone GQ02808_H08 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0C9RM18 | 0.0 | A0A0C9RM18_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_11489_4138 transcribed RNA sequence |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP133 | 16 | 172 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35940.3 | 5e-94 | BEL1-like homeodomain 1 |