PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_110587g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family HSF
Protein Properties Length: 384aa    MW: 42998 Da    PI: 7.0274
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_110587g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.91.2e-36271182102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d++l+++isw+e+g++f+v+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F++g+k+ll++
  MA_110587g0010  27 FLMKTYRLVDDPSLDDIISWNEDGTTFIVWRPAEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFRRGEKKLLCE 112
                     9*****************************************************************99.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+k+
  MA_110587g0010 113 IHRRKN 118
                     ****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.8E-3818111IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.9E-5823116IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.62E-3524116IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.3E-3227116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.6E-202750IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.6E-206577IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406690IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.6E-207890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MAQSVEQPND ATVPRPADSH RSIPTPFLMK TYRLVDDPSL DDIISWNEDG TTFIVWRPAE  60
FARDLLPNYF KHNNFSSFVR QLNTYGFRKI VPDRWEFANE FFRRGEKKLL CEIHRRKNPQ  120
ANGATANAXW EFANEFFRRG EKKLLCEIHR RKNPQANGAT ANMPESPSIT GEDQQGCSSA  180
LLPLSSPSEA GGLLDENERL KQQNLFLMSE VAQIKSLCSD ILAFMSKHAN ISAESLRKSL  240
DLNNVPDSFQ QGAPIDGSPA QSKDSCQRTQ LCSSVHLSEN ETANSCGNSK EMTDGKCVDS  300
VKAEDNDNSG SPKLFGVPLF SKKRSRPCSP DNDEKPEVNG NLFCVGNDAA LKCVKAEPGL  360
EMELRQKQAP WLKFRSARNE KVCN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-212711629129Heat shock factor protein 1
5d5v_B2e-212711629129Heat shock factor protein 1
5d5v_D2e-212711629129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1155320.0BT115532.1 Picea glauca clone GQ03701_B17 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ6Z9C89e-65HFB2B_ORYSJ; Heat stress transcription factor B-2b
SwissprotQ9C6355e-65HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A0D6R6B31e-111A0A0D6R6B3_ARACU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.13e-64heat shock transcription factor B4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Xiang J, et al.
    Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice.
    Plant Cell Rep., 2013. 32(11): p. 1795-806
    [PMID:23949687]