PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_110122g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 350aa    MW: 38532.2 Da    PI: 6.0101
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_110122g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.21.9e-10183224955
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     ErrRR ++N+ +  Lr+l+Pk      +K+ Ka+i+  +++Y+++Lq
  MA_110122g0010 183 ERRRRGQLNENLYALRSLVPKI-----TKMHKASIVGDTIRYVQDLQ 224
                     *********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.094174223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-15179243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-12180229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-15181242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.54E-11181228No hitNo description
PfamPF000105.2E-8182224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.573276350IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MEFTGRGEIS TICANSSFDT FDFNAFALTE AETADAGGHN GLLFCTDLMQ GICGAGSVIP  60
ISPSSSSSHA VDLQGWSFAT SDSLWASHDF PVKPDQSFQP PLLHEATEPL TRNETENFTQ  120
DHPSFHSFGG LDIPCETKLH GGSTPQGRVD KKEPNCGYSS DEIDDLMEED EKGSSQPKTL  180
LSERRRRGQL NENLYALRSL VPKITKMHKA SIVGDTIRYV QDLQKEVKDI QAEIESLRSN  240
VSRQNHAALS ENCNTPTPPT SPTLDVNVSK VQDIFHIRIY CKKNPGVLIR LMRALESLQL  300
DFHNVNITCL HGHIIKTATV KINKPHGPME ADALRGAILE ATSKYGLRTT
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5571678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.18e-28bHLH family protein