PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_109677g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

NAC

Protein Properties

Length: 440aa MW: 49451.4 Da PI: 6.5234

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_109677g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	181.3	2.4e-56	20	148	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhP deelv++yL++kv ++++++ ++i+evd++k+ePwdLp k+k +ekewyfFs rd+ky+tg+r+nrat++gyWkatgkd+e+++ MA_109677g0010 20 LPPGFRFHPMDEELVTYYLTQKVLDSSFSC-RAITEVDLNKCEPWDLPDKAKMGEKEWYFFSLRDRKYPTGTRTNRATEAGYWKATGKDREIYRG 113 79**************************.89***********99999************************************97 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrle 129 ++ lvg+kktLvfykgrapkgekt+Wvmheyrle MA_109677g0010 114 rSNILVGMKKTLVFYKGRAPKGEKTSWVMHEYRLE 148 45566**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.27E-62	12	172	IPR003441	NAC domain
PROSITE profile	PS51005	59.279	20	172	IPR003441	NAC domain
Pfam	PF02365	7.0E-28	21	147	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 440 aa Download sequence Send to blast
MELVNVNSKE QMNKMDDELL PPGFRFHPMD EELVTYYLTQ KVLDSSFSCR AITEVDLNKC 60 EPWDLPDKAK MGEKEWYFFS LRDRKYPTGT RTNRATEAGY WKATGKDREI YRGRSNILVG 120 MKKTLVFYKG RAPKGEKTSW VMHEYRLEGK FSYYDLPKTA KDEWVVARIF QKSSGAKKGP 180 LGLGRSSSYL NDVDSPTLPP LLESPCIPTS VGGALSFEGE SAGSAMDQQQ RVPCFSIPGY 240 TNNNQGFGFL PDQLQQNPGS ISSDTVEFAF LQNMLMGMNA NSSPTQIPPQ MSNLPSYSMG 300 PNSSFPTFSN LLNPGGIHPN SYIYKTQTDI ANDRFKQCKM EPPSPLFKSS GTLKNLTVQP 360 SSSQWISTSS GYQHRNQDNL EPKYGVAQQQ MQNQPMVSHS QETGLSTEMN AEISSVVSSQ 420 RNQPYHEDAQ DMDSIWNSFS

Sequence ? help Back to Top

Protein Sequence Length: 440 aa Download sequence Send to blast

MELVNVNSKE QMNKMDDELL PPGFRFHPMD EELVTYYLTQ KVLDSSFSCR AITEVDLNKC  60
EPWDLPDKAK MGEKEWYFFS LRDRKYPTGT RTNRATEAGY WKATGKDREI YRGRSNILVG  120
MKKTLVFYKG RAPKGEKTSW VMHEYRLEGK FSYYDLPKTA KDEWVVARIF QKSSGAKKGP  180
LGLGRSSSYL NDVDSPTLPP LLESPCIPTS VGGALSFEGE SAGSAMDQQQ RVPCFSIPGY  240
TNNNQGFGFL PDQLQQNPGS ISSDTVEFAF LQNMLMGMNA NSSPTQIPPQ MSNLPSYSMG  300
PNSSFPTFSN LLNPGGIHPN SYIYKTQTDI ANDRFKQCKM EPPSPLFKSS GTLKNLTVQP  360
SSSQWISTSS GYQHRNQDNL EPKYGVAQQQ MQNQPMVSHS QETGLSTEMN AEISSVVSSQ  420
RNQPYHEDAQ DMDSIWNSFS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-51	20	178	17	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-51	20	178	17	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-51	20	178	17	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-51	20	178	17	171	NO APICAL MERISTEM PROTEIN
4dul_A	1e-51	20	178	17	171	NAC domain-containing protein 19
4dul_B	1e-51	20	178	17	171	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT108209	0.0	BT108209.1 Picea glauca clone GQ03118_G07 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	G8CPZ0	1e-117	G8CPZ0_PICAB; Cup-shaped cotyledon

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP17	15	800

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	2e-95	NAC domain containing protein 100