PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_109677g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | NAC | ||||||||
Protein Properties | Length: 440aa MW: 49451.4 Da PI: 6.5234 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 181.3 | 2.4e-56 | 20 | 148 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhP deelv++yL++kv ++++++ ++i+evd++k+ePwdLp k+k +ekewyfFs rd+ky+tg+r+nrat++gyWkatgkd+e+++ MA_109677g0010 20 LPPGFRFHPMDEELVTYYLTQKVLDSSFSC-RAITEVDLNKCEPWDLPDKAKMGEKEWYFFSLRDRKYPTGTRTNRATEAGYWKATGKDREIYRG 113 79****************************.89***************99999****************************************97 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrle 129 ++ lvg+kktLvfykgrapkgekt+Wvmheyrle MA_109677g0010 114 rSNILVGMKKTLVFYKGRAPKGEKTSWVMHEYRLE 148 45566****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.27E-62 | 12 | 172 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.279 | 20 | 172 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.0E-28 | 21 | 147 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 440 aa Download sequence Send to blast |
MELVNVNSKE QMNKMDDELL PPGFRFHPMD EELVTYYLTQ KVLDSSFSCR AITEVDLNKC 60 EPWDLPDKAK MGEKEWYFFS LRDRKYPTGT RTNRATEAGY WKATGKDREI YRGRSNILVG 120 MKKTLVFYKG RAPKGEKTSW VMHEYRLEGK FSYYDLPKTA KDEWVVARIF QKSSGAKKGP 180 LGLGRSSSYL NDVDSPTLPP LLESPCIPTS VGGALSFEGE SAGSAMDQQQ RVPCFSIPGY 240 TNNNQGFGFL PDQLQQNPGS ISSDTVEFAF LQNMLMGMNA NSSPTQIPPQ MSNLPSYSMG 300 PNSSFPTFSN LLNPGGIHPN SYIYKTQTDI ANDRFKQCKM EPPSPLFKSS GTLKNLTVQP 360 SSSQWISTSS GYQHRNQDNL EPKYGVAQQQ MQNQPMVSHS QETGLSTEMN AEISSVVSSQ 420 RNQPYHEDAQ DMDSIWNSFS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-51 | 20 | 178 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-51 | 20 | 178 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-51 | 20 | 178 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-51 | 20 | 178 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-51 | 20 | 178 | 17 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-51 | 20 | 178 | 17 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT108209 | 0.0 | BT108209.1 Picea glauca clone GQ03118_G07 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | G8CPZ0 | 1e-117 | G8CPZ0_PICAB; Cup-shaped cotyledon |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 2e-95 | NAC domain containing protein 100 |