PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_108992g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | ERF | ||||||||
Protein Properties | Length: 192aa MW: 21722.3 Da PI: 4.5612 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.8 | 9.7e-17 | 23 | 72 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++kG+r +k +g+Wv+eIr p+ + r++lg+++t+e+Aa+a++ a +l+g MA_108992g0010 23 QFKGIRMRK-WGKWVSEIRMPN----StGRIWLGSYDTPEKAARAYDFAVYCLRG 72 69*****99.**********93....259********************999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 9.1E-29 | 22 | 82 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.47E-20 | 23 | 82 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.114 | 23 | 80 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.87E-27 | 23 | 82 | No hit | No description |
SMART | SM00380 | 3.7E-31 | 23 | 86 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-9 | 24 | 72 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-8 | 24 | 35 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-8 | 46 | 62 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MAKPSQNQNG PNRRENRSLK SRQFKGIRMR KWGKWVSEIR MPNSTGRIWL GSYDTPEKAA 60 RAYDFAVYCL RGSKAKFNFP HSPPEIHCVS SLSPPQIQAA AAKYAAGEFP LPSEDATFSS 120 SDLEAECGND GQEISAFWDS VLEDLDNDES LTLQDFQPLD MPMEDFGVLF QMTENWDLGG 180 FQNYFPLLEI LP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-16 | 23 | 81 | 14 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006843906.1 | 2e-39 | ethylene-responsive transcription factor ERF017 | ||||
TrEMBL | B8LPP6 | 1e-80 | B8LPP6_PICSI; Uncharacterized protein | ||||
STRING | ERN05581 | 7e-39 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74930.1 | 2e-36 | ERF family protein |