PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_10859g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB | ||||||||
Protein Properties | Length: 381aa MW: 42622.7 Da PI: 6.825 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.8 | 7.9e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l++++ ++G+g +W + ++++g++R++k+c++rw++yl MA_10859g0010 14 KGPWSPEEDCKLKEYIDKHGTGgNWLALPQKVGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 38 | 3.9e-12 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ ++ G++ W+ Ia+ ++ gRt++++k++w++ MA_10859g0010 69 GGFSEEEDNIICSLFISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.231 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.72E-26 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.9E-14 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.5E-15 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-23 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.88E-10 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 21.607 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 4.6E-11 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.1E-11 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.2E-23 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.07E-8 | 71 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 381 aa Download sequence Send to blast |
MGRAPCCDKA NVKKGPWSPE EDCKLKEYID KHGTGGNWLA LPQKVGLKRC GKSCRLRWLN 60 YLRPNIKHGG FSEEEDNIIC SLFISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGR 120 LKDRQTCHLV AAKQENKDVQ SYATSEAITS PNIYGPQRYQ HMNMDMDALY SNFGAGIIPH 180 MFEQNCGLTI TEPSSSSEPA TFWLNPQQVQ LDQEVFDHNS GLRKLCQRTE GVLVDHRSNN 240 CMTTISTGSP IQASNCTNPS EIPHSIAHNR YTSDAASLQI YYETAASPVL MYERNMDNHI 300 RQGNPIAASA QNDNSLVFSA SSSPEGENYE SAWMNIFSAE NNNLGAYGFS TELNDLLLYN 360 TDSLLQQREA YNSACGSISI K |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-25 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021675884.1 | 1e-84 | transcription factor MYB36 | ||||
TrEMBL | D5ABB6 | 1e-165 | D5ABB6_PICSI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 5e-76 | myb domain protein 36 |