PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_108219g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | C2H2 | ||||||||
Protein Properties | Length: 233aa MW: 26295.9 Da PI: 4.4389 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.8 | 9.1e-06 | 10 | 35 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 + Cp Cgk++ + + Lk Hi++ H MA_108219g0010 10 HICPfeECGKRYAHEYKLKAHIKStH 35 689********************988 PP | |||||||
2 | zf-C2H2 | 14.6 | 9.7e-05 | 72 | 97 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 + Cp C+k++ + + L+ H+r+ H MA_108219g0010 72 FACPydGCDKCYIHEYKLNLHLRReH 97 78**********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 7.7E-10 | 1 | 36 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 4.99E-7 | 1 | 37 | No hit | No description |
SMART | SM00355 | 0.026 | 10 | 35 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.785 | 10 | 40 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 12 | 35 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.55E-5 | 68 | 95 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.0E-7 | 69 | 94 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.099 | 72 | 99 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.014 | 72 | 97 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 74 | 97 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MRTHSQENYH ICPFEECGKR YAHEYKLKAH IKSTHEKNLA NAVKLPPQNE REFLHPKVPT 60 SVYGSVPSDR PFACPYDGCD KCYIHEYKLN LHLRREHAGY AFEENGRHGS DSEDEMDQGS 120 DQDGNGRNAG IMTGSGRGRL RVTSKTSSAT NLHRKFMNAA AVDSNTKTSS RAIVESKEPG 180 KGHPREDSEE TEDQEDTDNE GWGHGTETDD DDEDDNDDDD DDADEEETED DMD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Dual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT104967 | 0.0 | BT104967.1 Picea glauca clone GQ02817_C11 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011629428.1 | 5e-60 | uncharacterized zinc finger protein At4g06634 isoform X4 | ||||
Swissprot | Q2V3L3 | 1e-37 | YY1_ARATH; Zinc finger transcription factor YY1 | ||||
TrEMBL | B8LR03 | 8e-76 | B8LR03_PICSI; Uncharacterized protein | ||||
STRING | ERM97843 | 6e-60 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP3856 | 16 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G06634.2 | 5e-40 | C2H2 family protein |
Publications ? help Back to Top | |||
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