PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_108198g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family LFY
Protein Properties Length: 410aa    MW: 46864.3 Da    PI: 8.2559
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_108198g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY571.42.5e-17414081386
         FLO_LFY   1 mdpeafsaslfkwdpraaaaapp..........arlleeaavseap.leaaaaaaark.lreleelfkayGvryltvakiaelGftvstLvdmkd 83 
                     mdpe+fsa++fkwd+r+ a app          +r+++++ v++a+ ++++++ ++rk l++leelf++yGvry+t++k++++Gftv+tLv+m++
  MA_108198g0010   1 MDPESFSAAFFKWDQRPSALAPPqmqrgggleaQRVFHDFGVPNAAaMTSNNSGSCRKeLNCLEELFRHYGVRYITLTKMVDMGFTVNTLVNMTE 95 
                     9*************99998777667888888889999999998887433333334444588********************************** PP

         FLO_LFY  84 eelddlmkslseifrldllvGeryGikaavraerrrleeeeaekkrrkll.....sedeetaldalsqeglseepvqeekeaagsggeglg..ea 171
                     +elddl+++l++i+r++llvGe+yGik+a+rae+rrl+e+e +++ + ++      + +e+ald+lsqegls e+ q  +    s++++++    
  MA_108198g0010  96 QELDDLIRTLVDIYRVELLVGEKYGIKSAIRAEKRRLDEAERKRMEQLFVdvdgkRKIDENALDTLSQEGLSVEEPQGDNAIILSQNNTSAsfPL 190
                     ***************************************98655555555666543334669********8866555543333332222220022 PP

         FLO_LFY 172 elvaaee.kkseeekkkaskk.kq.krkkkkelkseededeeeeededeegsgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefL 263
                     +l a  +     +++ +  ++         ++  se+ +  ++++ + +++sgedgeerqrehPfivtepge+argkknGLDYLfdLyeqC++fL
  MA_108198g0010 191 NLNAGMDpVLILQNSCHLGTTvSGlIGMPDSNYGSEQTKGCKKQKRRRSKDSGEDGEERQREHPFIVTEPGELARGKKNGLDYLFDLYEQCGKFL 285
                     2222222122222222222221220222222223335555666667777889******************************************* PP

         FLO_LFY 264 lqvqkiakerGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidav 358
                     l+vq+iakerGekcPtkvtnqvfr+ak++ga yinkPkmrhYvhCYalhcLd e+sn+lrra+kergenvGawrqacy+plva+a+++ wdi++v
  MA_108198g0010 286 LDVQHIAKERGEKCPTKVTNQVFRHAKHSGAGYINKPKMRHYVHCYALHCLDVEQSNRLRRAYKERGENVGAWRQACYYPLVAMAKDNVWDIEGV 380
                     *********************************************************************************************** PP

         FLO_LFY 359 fnahprLsiWYvPtkLrqLChlerskas 386
                     fn+h++L+iWYvPtkLrqLCh e+sk+s
  MA_108198g0010 381 FNKHEKLRIWYVPTKLRQLCHFEKSKQS 408
                     *************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016985.3E-1471406IPR002910Floricaula/leafy protein
Gene3DG3DSA:1.10.238.104.9E-459158IPR011992EF-hand domain pair
Gene3DG3DSA:1.10.238.104.9E-4289322IPR011992EF-hand domain pair
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0031490Molecular Functionchromatin DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MDPESFSAAF FKWDQRPSAL APPQMQRGGG LEAQRVFHDF GVPNAAAMTS NNSGSCRKEL  60
NCLEELFRHY GVRYITLTKM VDMGFTVNTL VNMTEQELDD LIRTLVDIYR VELLVGEKYG  120
IKSAIRAEKR RLDEAERKRM EQLFVDVDGK RKIDENALDT LSQEGLSVEE PQGDNAIILS  180
QNNTSASFPL NLNAGMDPVL ILQNSCHLGT TVSGLIGMPD SNYGSEQTKG CKKQKRRRSK  240
DSGEDGEERQ REHPFIVTEP GELARGKKNG LDYLFDLYEQ CGKFLLDVQH IAKERGEKCP  300
TKVTNQVFRH AKHSGAGYIN KPKMRHYVHC YALHCLDVEQ SNRLRRAYKE RGENVGAWRQ  360
ACYYPLVAMA KDNVWDIEGV FNKHEKLRIW YVPTKLRQLC HFEKSKQSHL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4bhk_A9e-982414084171FLORICAULA/LEAFY HOMOLOG 1
4bhk_B9e-982414084171FLORICAULA/LEAFY HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00095SELEXTransfer from AT5G61850Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7017630.0AY701763.1 Picea abies LEAFY-like protein (LFY) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002978027.11e-136floricaula/leafy-like protein FL1
SwissprotO041160.0FLL_PINRA; Floricaula/leafy-like protein
TrEMBLA0A455QYY00.0A0A455QYY0_9SPER; FLORICAULA/LEAFY-like protein
STRINGEFJ206841e-135(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP70181619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.11e-115floral meristem identity control protein LEAFY (LFY)
Publications ? help Back to Top
  1. Mellerowicz EJ,Horgan K,Walden A,Coker A,Walter C
    PRFLL--a Pinus radiata homologue of FLORICAULA and LEAFY is expressed in buds containing vegetative shoot and undifferentiated male cone primordia.
    Planta, 1998. 206(4): p. 619-29
    [PMID:9821691]