PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_104992g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | ERF | ||||||||
Protein Properties | Length: 239aa MW: 25937.1 Da PI: 9.0222 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.5 | 1e-15 | 1 | 49 | 4 | 56 |
AP2 4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +GVr ++ +gr++AeI dp + +kr +lg+f+t eeAa+ +++ +++++g+ MA_104992g0010 1 RGVRKRP-WGRYAAEITDPLT---KKRKWLGTFDTGEEAAREYDKVARNMRGA 49 8******.**********743...4*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.46E-27 | 1 | 57 | No hit | No description |
SMART | SM00380 | 2.1E-26 | 1 | 62 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.481 | 1 | 56 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.51E-18 | 1 | 57 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.0E-10 | 1 | 48 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.9E-26 | 1 | 56 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
RGVRKRPWGR YAAEITDPLT KKRKWLGTFD TGEEAAREYD KVARNMRGAN AKTNFPAPSP 60 HLENLVHNQS STTTVATSLP APPLSSTPAN HRKIKNKTSA SSGVAEQMEP WTRVYVNEGA 120 ADHNMNRSTK TTIPFPHNLV DYATLLQQLP VGVSLLGEIV GSQMMKRHGG HDWLGVGLVN 180 SFLPAAAQTS ACESSSSSGL VDTQLSPPPP TKEKATLRSI DLNEDDEDER SPSLTLSLG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-16 | 1 | 56 | 16 | 72 | Ethylene-responsive transcription factor ERF096 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 3 | 23 | RKRPWGRYAAEITDPLTKKRK |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT107691 | 0.0 | BT107691.1 Picea glauca clone GQ03111_J02 mRNA sequence. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24590.1 | 2e-26 | DORNROSCHEN-like |