PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_10437041g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | NAC | ||||||||
Protein Properties | Length: 356aa MW: 40175.8 Da PI: 4.858 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 134.9 | 5.3e-42 | 7 | 134 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWk.atgkdke 91 ppGf FhPtdeel ++yLk+kv g + ++ +vi+e+d y++ePwdLp +++k ++ + yfFs+r+ +y+ g+ k ratk gyWk +tgkd++ MA_10437041g0010 7 PPGFCFHPTDEELFTHYLKRKVCGWPQPC-SVISEADPYEYEPWDLPgtACLKRRNLKGYFFSPRNGEYPIGSMKVRATKVGYWKvTTGKDRT 98 8*************************999.99***************533555555588**************************889***** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + + +e+ g+kktLvfy+grap+ge+t+W mhey l MA_10437041g0010 99 ISA-CSEVLGIKKTLVFYRGRAPHGERTNWRMHEYIL 134 *99.99*****************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.45E-52 | 4 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 47.81 | 6 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.4E-23 | 7 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MGHNSQPPGF CFHPTDEELF THYLKRKVCG WPQPCSVISE ADPYEYEPWD LPGTACLKRR 60 NLKGYFFSPR NGEYPIGSMK VRATKVGYWK VTTGKDRTIS ACSEVLGIKK TLVFYRGRAP 120 HGERTNWRMH EYILDDCNNS NSNTVKQSYV LCKVFQKNIR RRCKHCRPSS SQVGKTECPD 180 GEHGEMASLN IQNITQATND VNIPPDGLLL GQGSVLNEAL ALQGNSEVPD NDELHMFLMT 240 HIGDPDDPEL DNEENGPMAP SAFANQPQQF VDTNLEKVRS GDEQNPMQDC TEDDVGNLHF 300 QDTMIAEGEN SRFRSSSPDQ HDLFLDSWIQ TVQNLNDSLE FFVMPQVYNS MGELAG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-41 | 5 | 158 | 16 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-41 | 5 | 158 | 16 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-41 | 5 | 158 | 16 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-41 | 5 | 158 | 16 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 9e-41 | 5 | 158 | 19 | 169 | NAC domain-containing protein 19 |
3swm_B | 9e-41 | 5 | 158 | 19 | 169 | NAC domain-containing protein 19 |
3swm_C | 9e-41 | 5 | 158 | 19 | 169 | NAC domain-containing protein 19 |
3swm_D | 9e-41 | 5 | 158 | 19 | 169 | NAC domain-containing protein 19 |
3swp_A | 9e-41 | 5 | 158 | 19 | 169 | NAC domain-containing protein 19 |
3swp_B | 9e-41 | 5 | 158 | 19 | 169 | NAC domain-containing protein 19 |
3swp_C | 9e-41 | 5 | 158 | 19 | 169 | NAC domain-containing protein 19 |
3swp_D | 9e-41 | 5 | 158 | 19 | 169 | NAC domain-containing protein 19 |
4dul_A | 7e-41 | 5 | 158 | 16 | 166 | NAC domain-containing protein 19 |
4dul_B | 7e-41 | 5 | 158 | 16 | 166 | NAC domain-containing protein 19 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT119954 | 0.0 | BT119954.1 Picea glauca clone GQ04113_B08 mRNA sequence. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65910.1 | 2e-53 | NAC domain containing protein 28 |