PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10436944g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 354aa    MW: 36903.3 Da    PI: 10.6131
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10436944g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.11.3e-10133177144
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 
                       r+ WT+eEd  l+ av++ G g+W++I +      Rt+ q+  rw
  MA_10436944g0010 133 RKLWTQEEDNELIAAVQKCGEGNWSSILKGAFkHDRTASQLSQRW 177
                       567**************************9999999**9999999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.79127185IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.7E-15128184IPR009057Homeodomain-like
SuperFamilySSF466893.52E-13130183IPR009057Homeodomain-like
SMARTSM007176.8E-10132183IPR001005SANT/Myb domain
PfamPF002495.9E-9133177IPR001005SANT/Myb domain
CDDcd116601.92E-14136182No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MDWIRGKVGV VIWLFIAPVS KRHFEIKPFP TVGSEASSEA AACVKVLATS GTPNNAGLPS  60
HSTLEAPLTI NIPSNTKISD VEVNNQQSTI STQGMNITVP VSIQKQQLPT VCSLEGTDGN  120
VSTNSIHPAR KKRKLWTQEE DNELIAAVQK CGEGNWSSIL KGAFKHDRTA SQLSQRWSLI  180
RKRKVVSNQG NLGNSSTLSA TLDATQSTAQ AVPVAISTIS GVAVTTTAVT ANSAGATAVM  240
TSCSSLVQST ALIGMGISFS QSTAGKISDN SASQLHQAQH VHEQGIVRGS TGSSNVSTTL  300
PSTKSRHTTK KHATKTAAPL PATNPGPARC GNAPASRPGT SEALSRGSTK TLSX
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP59231520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.11e-39MYB_related family protein