PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_10436931g0040 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | WRKY | ||||||||
Protein Properties | Length: 97aa MW: 10924.5 Da PI: 9.9322 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102.9 | 1.8e-32 | 26 | 84 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs+ pr+YY+C s gCp++k+vers +dp+++++tYegeHnh+ MA_10436931g0040 26 ADEYSWRKYGQKPIKGSPRPRGYYKCNSVrGCPARKHVERSLDDPSMLIVTYEGEHNHS 84 69************************8877****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 2.2E-5 | 6 | 23 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 3.1E-34 | 13 | 85 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.584 | 20 | 86 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.76E-28 | 23 | 85 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-37 | 25 | 85 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.8E-28 | 27 | 83 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 97 aa Download sequence Send to blast |
MAIKQSQVKR TIKVPAFSAK MADIPADEYS WRKYGQKPIK GSPRPRGYYK CNSVRGCPAR 60 KHVERSLDDP SMLIVTYEGE HNHSQSMSES TGLVVDP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 9e-23 | 13 | 83 | 2 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Regulates rhizobacterium B.cereus AR156-induced systemic resistance (ISR) to P.syringae pv. tomato DC3000, probably by activating the jasmonic acid (JA)- signaling pathway (PubMed:26433201). {ECO:0000250, ECO:0000269|PubMed:26433201}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly during leaf senescence (PubMed:11722756). Repressed by rhizobacterium B.cereus AR156 in leaves, and to a lower extent, by P.fluorescens WCS417r (PubMed:26433201). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:26433201}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT105770 | 1e-144 | BT105770.1 Picea glauca clone GQ02828_D03 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006845756.1 | 2e-50 | probable WRKY transcription factor 11 | ||||
Swissprot | Q9SV15 | 1e-45 | WRK11_ARATH; Probable WRKY transcription factor 11 | ||||
TrEMBL | A0A3G6JAF5 | 1e-56 | A0A3G6JAF5_PINTA; WRKY DNA-binding protein 11 | ||||
STRING | ERN07431 | 7e-50 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31550.1 | 4e-48 | WRKY DNA-binding protein 11 |