PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_10436747g0020

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

MYB_related

Protein Properties

Length: 343aa MW: 38435.8 Da PI: 6.4387

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_10436747g0020	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.7	5.7e-08	8	30	22	46
T-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqk 46 + W+ I+ +++ gRt++++k++w++ MA_10436747g0020 8 R-WSQISVHLP-GRTDNEIKNYWNS 30 5.*******.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.164	1	36	IPR017930	Myb domain
SuperFamily	SSF46689	1.56E-7	6	39	IPR009057	Homeodomain-like
CDD	cd00167	4.84E-6	7	29	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.8E-11	7	32	IPR009057	Homeodomain-like
Pfam	PF00249	1.2E-5	7	30	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MSMTMLNRWS QISVHLPGRT DNEIKNYWNS CIKKKRKFKH HISSQCAQPY IDAKPEGYQT 60 PNDTFNVVPT GDNQFCVPGV SELKQEQVQD NNNEINPLIS YFQTSTHTFD SVSSHAAFLG 120 STGITIPAFA ESECLKEKVE NDEWTTRHSY SNADNWSHVV NPGAYRGHTT RISVVEDCES 180 LYENTTHQSC SSPSFHSQFV APAIKWPPGK SNGFQVEDDC RDRLNLGYDV STGVPKYTEI 240 YSRQKSYRLP QIHGGDCLTV PYQETNANPI STISGGSGSG QFEIECNSEA GHVTLSTNDD 300 MYNLNTRAML HFRRMTICTI SILVVVLISI ESIVISIKST LAR

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MSMTMLNRWS QISVHLPGRT DNEIKNYWNS CIKKKRKFKH HISSQCAQPY IDAKPEGYQT  60
PNDTFNVVPT GDNQFCVPGV SELKQEQVQD NNNEINPLIS YFQTSTHTFD SVSSHAAFLG  120
STGITIPAFA ESECLKEKVE NDEWTTRHSY SNADNWSHVV NPGAYRGHTT RISVVEDCES  180
LYENTTHQSC SSPSFHSQFV APAIKWPPGK SNGFQVEDDC RDRLNLGYDV STGVPKYTEI  240
YSRQKSYRLP QIHGGDCLTV PYQETNANPI STISGGSGSG QFEIECNSEA GHVTLSTNDD  300
MYNLNTRAML HFRRMTICTI SILVVVLISI ESIVISIKST LAR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01680.3	1e-11	myb domain protein 55