PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_10436654g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | ERF | ||||||||
Protein Properties | Length: 188aa MW: 20978.7 Da PI: 5.3387 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.3 | 1.4e-16 | 24 | 72 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +kG+r +k +g+Wv+eIr p++ + r++lg+++ +e+Aa+a++ a+ +l+g MA_10436654g0010 24 FKGIRMRK-WGKWVSEIRIPNS---SGRIWLGSYDNPEKAARAYDFAMYYLRG 72 8*****99.**********933...49************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.3E-26 | 23 | 81 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.0E-26 | 23 | 86 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.323 | 23 | 80 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-18 | 23 | 81 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.86E-25 | 23 | 81 | No hit | No description |
Pfam | PF00847 | 9.6E-10 | 24 | 72 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.1E-8 | 24 | 35 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.1E-8 | 46 | 62 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MTKPSQNRSC HSSPKSCSLK SWQFKGIRMR KWGKWVSEIR IPNSSGRIWL GSYDNPEKAA 60 RAYDFAMYYL RGSKVKLNFP HCPPKISCAS SLSPPQIQAA AAKFAAEEFR LPSENGAACS 120 SSGLESEGDI DDQQIFSEQG PTVRDSVPLE RMESFGSLNV EDIPPLDVSM EDFGILFPLS 180 EDWGMEIF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-15 | 15 | 81 | 6 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ116320 | 1e-105 | FJ116320.1 Pinus taeda isolate 4490 anonymous locus UMN_5771_02 genomic sequence. | |||
GenBank | FJ116328 | 1e-105 | FJ116328.1 Pinus taeda isolate 4492 anonymous locus UMN_5771_02 genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021276768.1 | 3e-36 | ethylene-responsive transcription factor ERF017 | ||||
TrEMBL | B8LPP6 | 8e-74 | B8LPP6_PICSI; Uncharacterized protein | ||||
STRING | ERN05581 | 2e-35 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74930.1 | 1e-32 | ERF family protein |