PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_10436384g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

Nin-like

Protein Properties

Length: 611aa MW: 66737.1 Da PI: 6.9177

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_10436384g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	53.3	5.5e-17	39	64	27	52
RWP-RK 27 vclTvLKriCRqyGIkRWPhRkiksl 52 vc+T+LKriCRq+GI+RWP+Rki+++ MA_10436384g0010 39 VCPTTLKRICRQHGIARWPSRKINKV 64 ************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	12.889	1	84	IPR003035	RWP-RK domain
Pfam	PF02042	2.4E-14	37	64	IPR003035	RWP-RK domain
SuperFamily	SSF54277	4.91E-24	505	597	No hit	No description
SMART	SM00666	1.3E-22	512	594	IPR000270	PB1 domain
PROSITE profile	PS51745	21.554	512	594	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	4.4E-23	513	593	No hit	No description
CDD	cd06407	9.92E-32	513	593	No hit	No description
Pfam	PF00564	2.1E-17	513	593	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 611 aa Download sequence Send to blast
MISFSQRSFF TAIASLNTLP FQCLFLSKKH QAHDPLSSVC PTTLKRICRQ HGIARWPSRK 60 INKVNRSLKK LQGVIDSIQG ADGTLKLNAI ITDIMTVASM VQGLQMHSSI LPSQGSWAIS 120 WSSPEDFITR KAVPVRLGTA VPLEETTYQK ENLNNTPQTI LSTSLESSLS LKAASEAHGG 180 YDIHIQRPSA DGNISSSKND LLASHFRESA QQGSLAYMKG QLEKAMEILF WMAKDFITRK 240 AVPVGLGTAV PLEETTYQKE NLNNTPQTIL STGLESKLSL KAASEAHGGC DIHIQRPSAD 300 GNISSSKNDL LARHFRESAQ QGSLAYMKGQ LEVTEKDKNV QSVGFAGHEI VRNSFSAVAP 360 FGERHQPVTY RSDTSEFNSI PFTGKTRGFA EGIVENCQQV GHQFQGGKHD SRNLKIVQTG 420 ENLSLQDADC QVTSKHSDFF VLVNSKEPIV NSADEEVPQH EQNLPVFSGM TNSSAGSGSS 480 SSSLQGCDSS SPTVSGVDGL QRERHNKDEN SAITVKAKYK EDMVRFKLPL SSGFSELCDE 540 VAKRFKLIVG TFQLKYQDDD DEWVLLACNA DFHECIDVMN FSGGHAIRLL VRDLVSVVGS 600 SSGSCGDVLQ C

Sequence ? help Back to Top

Protein Sequence Length: 611 aa Download sequence Send to blast

MISFSQRSFF TAIASLNTLP FQCLFLSKKH QAHDPLSSVC PTTLKRICRQ HGIARWPSRK  60
INKVNRSLKK LQGVIDSIQG ADGTLKLNAI ITDIMTVASM VQGLQMHSSI LPSQGSWAIS  120
WSSPEDFITR KAVPVRLGTA VPLEETTYQK ENLNNTPQTI LSTSLESSLS LKAASEAHGG  180
YDIHIQRPSA DGNISSSKND LLASHFRESA QQGSLAYMKG QLEKAMEILF WMAKDFITRK  240
AVPVGLGTAV PLEETTYQKE NLNNTPQTIL STGLESKLSL KAASEAHGGC DIHIQRPSAD  300
GNISSSKNDL LARHFRESAQ QGSLAYMKGQ LEVTEKDKNV QSVGFAGHEI VRNSFSAVAP  360
FGERHQPVTY RSDTSEFNSI PFTGKTRGFA EGIVENCQQV GHQFQGGKHD SRNLKIVQTG  420
ENLSLQDADC QVTSKHSDFF VLVNSKEPIV NSADEEVPQH EQNLPVFSGM TNSSAGSGSS  480
SSSLQGCDSS SPTVSGVDGL QRERHNKDEN SAITVKAKYK EDMVRFKLPL SSGFSELCDE  540
VAKRFKLIVG TFQLKYQDDD DEWVLLACNA DFHECIDVMN FSGGHAIRLL VRDLVSVVGS  600
SSGSCGDVLQ C

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT109097	0.0	BT109097.1 Picea glauca clone GQ03204_J16 mRNA sequence.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP299	16	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	7e-23	Nin-like family protein