PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10436317g0020
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family RAV
Protein Properties Length: 960aa    MW: 107642 Da    PI: 9.3976
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10436317g0020genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.26.3e-13741581198
                       HHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                B3  11 lksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkl.iyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                       ++sg +++p  f++++ +g++     +t+ed +g sW+v+   y ++++r v+t+GW eF+++++ k+ D+++ ++ +++ f  +v++++
  MA_10436317g0020  74 GRSGKMSFPVMFMTKYlSGSQ---GIVTFEDCDGISWRVEWyAYLQSGRRLVFTTGWPEFASDHNAKDSDILLVEVLNSEHF--RVQILS 158
                       67899***********74442...36**************9456999999*************************7776777..888876 PP
2AP241.53.3e-13821870155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s++ GVr ++ +g + AeIr p       kr +lg++ t+e Aa a++ a++k++g
  MA_10436317g0020 821 SRFVGVRKRP-WGAYGAEIRTP-----EgKRLWLGTYTTEEAAAHAYDDAARKFKG 870
                       6899******.**********8.....55***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.8E-1659158IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-1659160IPR015300DNA-binding pseudobarrel domain
CDDcd100172.60E-1462158No hitNo description
PROSITE profilePS5086311.19464160IPR003340B3 DNA binding domain
SMARTSM010198.3E-964160IPR003340B3 DNA binding domain
PfamPF023626.1E-1274158IPR003340B3 DNA binding domain
PfamPF138914.5E-12394456IPR025927Potential DNA-binding domain
CDDcd000181.36E-13821877No hitNo description
PfamPF008471.4E-7821870IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-15821878IPR016177DNA-binding domain
PROSITE profilePS5103221.114822878IPR001471AP2/ERF domain
SMARTSM003801.6E-25822884IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-23822879IPR001471AP2/ERF domain
PRINTSPR003671.9E-5823834IPR001471AP2/ERF domain
PRINTSPR003671.9E-5844860IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 960 aa     Download sequence    Send to blast
MEIRAQVIWT GESWLFVDNE TSQMGTKGSF KNRYKPHVGE GLLSPNREMV TDFVKEIFTE  60
YPSFARTIQR KCLGRSGKMS FPVMFMTKYL SGSQGIVTFE DCDGISWRVE WYAYLQSGRR  120
LVFTTGWPEF ASDHNAKDSD ILLVEVLNSE HFRVQILSGE SCMAVKENKA PGCAREGASN  180
RNDILDARSK HFSSRETLQS FRKGGTLRNC TKAKREKKTS VGYRRYRTWQ ENQSRKAKTG  240
DKADLEVSRS KIGEYKHEFE REACSLTFDT IPKDKTTAVS QEQTGNHQPV PFFGSKEASS  300
SILGLTTAQQ DDCSSCPKEK ETPLGPPKVI VDRQLIDAGS QLADSTLLFH KRGLSGSEKE  360
DSRINLSPCH YPLPSIFGFQ HTFTGGRQYA ASFCQSTNEK CSQYVFCGFR FCMLHILEDP  420
SAPYKQCDFI VPSSGQRCRF AVSLNIADIR FCQIHKQMRM TESRLEDIIH KENPYCGTMS  480
LLVMAATVAH HDLECFDPSK MLEPIETNLT DHSGRQSSLP KILARPQAAT FDVLPVSMPY  540
RQEDQVSGDD KQPAKYFPVR RKTGHQRSGI VDKVQSKQKM PEACNSHVQY DVKVSVSRKT  600
LKSVRGNCSS TGTGFMKRRD RHVPVAADNV DSGIEHGGKS CAEIVECNVF SNMNESLEKG  660
LCIKGIPFKK ETFEGGKSCR NGTAGSPKKM LSEATCQVYE KPNRIPFNSA FFGPGAKRRC  720
SLFHGVPSLV EVGPIDLTRV GLMWTPAKLL QCSGRDSSSE HLDQIRLTPI IDLGEMDITT  780
MSLKCPVREP RRSTGILKKQ KQRSDAKELA PKGHGRRVSF SRFVGVRKRP WGAYGAEIRT  840
PEGKRLWLGT YTTEEAAAHA YDDAARKFKG KGAVTNFSKD SDMDSPLEAP LRSLRDQASM  900
FREAPKRRRS SNSKKRDEDQ LLPDENAAKN LWDLTTPGRS PPKLLDGNYI SGSAHRGALW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-14813885579Ethylene-responsive transcription factor ERF096
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1236736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.14e-08B3 family protein