PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_10436314g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

LSD

Protein Properties

Length: 105aa MW: 10794.3 Da PI: 8.7744

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_10436314g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	41.5	2.1e-13	74	98	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCrtlL YP GAp+V+Ca+C++V MA_10436314g0010 74 CNGCRTLLVYPQGAPNVCCAVCNAV 98 ************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	9.9E-13	71	101	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	3.7E-12	74	98	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 105 aa Download sequence Send to blast
MLSGGYSTRS DTTPVNNGSA NGPIGSAPPR INSIQNNNPG AVRPGWGTMP LRMNPYPPQP 60 MPLPPSNVQG QLVCNGCRTL LVYPQGAPNV CCAVCNAVTA VPPPG

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT071760	1e-171	BT071760.1 Picea sitchensis clone WS0452_N14 unknown mRNA.
GenBank	BT106309	1e-171	BT106309.1 Picea glauca clone GQ02907_A02 mRNA sequence.
GenBank	EF084706	1e-171	EF084706.1 Picea sitchensis clone WS02727_J11 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010269986.1	1e-16	PREDICTED: protein LSD1
Refseq	XP_010269987.1	1e-16	PREDICTED: protein LSD1
Refseq	XP_010269988.1	1e-16	PREDICTED: protein LSD1
TrEMBL	A9NTQ6	1e-65	A9NTQ6_PICSI; Uncharacterized protein
STRING	XP_010269986.1	4e-16	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP1146	17	53