PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10436305g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 459aa    MW: 51194.8 Da    PI: 6.9042
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10436305g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.99.8e-131152345
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                       W ++E+ ll+++v+++G g+W+ +a ++g ++t  qc +++ 
  MA_10436305g0010 11 DWNADEEILLLEGVEMYGLGNWAEVADHVG-TKTKSQCYDHYM 52
                      6*****************************.**********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0250247.6E-1071453IPR016827Transcriptional adaptor 2
SuperFamilySSF466896.36E-13457IPR009057Homeodomain-like
PROSITE profilePS5129321.682759IPR017884SANT domain
SMARTSM007176.9E-11857IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-91151IPR009057Homeodomain-like
PfamPF002493.4E-121151IPR001005SANT/Myb domain
CDDcd001676.23E-121252No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009631Biological Processcold acclimation
GO:0009733Biological Processresponse to auxin
GO:0009735Biological Processresponse to cytokinin
GO:0016573Biological Processhistone acetylation
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
DNLSFPLIHP DWNADEEILL LEGVEMYGLG NWAEVADHVG TKTKSQCYDH YMLAYMNSPC  60
YPLPDMSHVI GKTKAELLNM AKVHGEGKKG FSAYGDPILS KPPKEEPSIS PLRIKVEDVN  120
KDSSAEGRSP STFIAEGENS ENKANNLRGN GTGKKASNAV QVKEGSNGLV AGSPALAEDP  180
LTNRSIGGKK PKASGEDGSP LLELSGYNPK RQEFDPEYDN DAELPLAEME FKENDSETDH  240
ELKLRMLRIY LSRLDERKRR KDFILERDLL HSRPLDKILS KEEKELYQRC RVFMRFHSQE  300
EHNALLDGLN MERRLRQRIE ELQEYRAAGC HTLAEGEQYA AEKKKREAEA NQKKSKESYQ  360
MAASAKVAQR ANRTTNRERG EGDGSPGCMV DNQKIKSTAG QAPVGNNTCP AATGQKGTKK  420
SLIQWDIMGF PGTELLSVTV SLLLLTCHKR LLSLLSFSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cw2_C8e-1846757120Transcriptional adapter 2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1256261RKRRKD
Functional Description ? help Back to Top
Source Description
UniProtRequired for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known. ADA2 and GCN5 function to acetylate nucleosomes, opening up the promoter region (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1223820.0BT122382.1 Picea sitchensis clone WS0444_N23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011625124.10.0transcriptional adapter ADA2 isoform X1
SwissprotQ75LL61e-153TADA2_ORYSJ; Transcriptional adapter ADA2
TrEMBLD5A8970.0D5A897_PICSI; Transcriptional adapter
STRINGERN105690.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP2480912
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]