PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_10436137g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | HB-other | ||||||||
Protein Properties | Length: 173aa MW: 20008.4 Da PI: 9.5648 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 50.9 | 2.6e-16 | 24 | 82 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le++++++ +ps+ +r +L ++ +++ +q+kvWFqNrR ++k+ MA_10436137g0010 24 KYVRYTNEQVEALERAYNECCKPSTGRRLQLIRENpilsNIEPKQIKVWFQNRRCRDKQ 82 5679*****************************99999******************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.2E-17 | 8 | 80 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.317 | 19 | 83 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.5E-11 | 21 | 87 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.99E-15 | 22 | 86 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.18E-10 | 24 | 84 | No hit | No description |
Pfam | PF00046 | 6.5E-14 | 25 | 82 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.20.5.170 | 1.6E-4 | 81 | 129 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MPSIMDRQTS GEDSDSKGPL DNGKYVRYTN EQVEALERAY NECCKPSTGR RLQLIRENPI 60 LSNIEPKQIK VWFQNRRCRD KQRKETSRLL SWNGKFTAMN QLLLEENERL RKQATQLDSE 120 NQYLRQQLQL LHARAGNNSR SLQQMAVTAN DTISDSVVTS CNGSNTHRNI LHT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR166 in the shoot apicam meristem (SAM) region of devoloping embryo. {ECO:0000269|PubMed:17804793}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ711058 | 0.0 | KJ711058.1 Pinus tabuliformis clone PtHB3 HB3 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008791541.1 | 2e-52 | homeobox-leucine zipper protein HOX9-like isoform X1 | ||||
Refseq | XP_010920423.1 | 2e-52 | homeobox-leucine zipper protein HOX9 isoform X3 | ||||
Refseq | XP_010920424.1 | 2e-52 | homeobox-leucine zipper protein HOX9 isoform X4 | ||||
Refseq | XP_016743819.1 | 5e-53 | PREDICTED: homeobox-leucine zipper protein ATHB-15-like | ||||
Swissprot | A2Z8L4 | 6e-49 | HOX9_ORYSI; Homeobox-leucine zipper protein HOX9 | ||||
Swissprot | Q9AV49 | 6e-49 | HOX9_ORYSJ; Homeobox-leucine zipper protein HOX9 | ||||
TrEMBL | A0A0K0M717 | 6e-90 | A0A0K0M717_PINTB; HB3 | ||||
STRING | XP_008791541.1 | 9e-52 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52150.3 | 2e-41 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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